ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4089

TrivialName: PA14_25620

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25620

PAO1 Ortholog Locus: PA2971

Sequence Length: 537

Protein Length: 178

Start: 2240409

Stop: 2240945

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06359.1|AE004723_3 (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 178/178 (100%), Positives = 178/178 (100%)

Sequence:

ATGTTGAATGGGCCGATTCCACCTCATATCGATCCGCGCAAGTTGGTCGACCGCGGCGCCACCCTCGAGGGT
GTGTACGCGCTCGCCGATATGCCGCGTGTATGCGAGCAACTGACCAGCGATGCCGGTGAGGTGCGCGTGAAG
GTTTCCTTCGAGCGCGACCACCAGAAGCTGGCGGTCATGCATATGCAGCTCGATACCGAGGTGAGCATGGTA
TGCCAACGCTGCCTGGATGCGGCGGCCATTCCCGTGCATGGCGAATATACCTACGCCATTCTTCGGGAAGGT
CAGTCCGCCGACGGTCTGCCGAAGGGGTACGATGCGCTGGAAGTGGGGGAGGAACCCCTGGACCTGCTGGCG
CTGGTCGAGGACGAGCTGTTGCTCGCCTTACCCATCGTTCCGGCCCATGACCCCGAAGTATGTCAGCACCCG
GCTGGATTCGTCGTCGAAGACGAGCCGGAGTCGAGCGAAGTCGAGGACAAGCGTCCTAATCCGTTCAGCGTA
CTGGCACAGTTGAAGCGTGACCCAAACGTTTAG

Translation:

MLNGPIPPHIDPRKLVDRGATLEGVYALADMPRVCEQLTSDAGEVRVKVSFERDHQKLAVMHMQLDTEVSMV
CQRCLDAAAIPVHGEYTYAILREGQSADGLPKGYDALEVGEEPLDLLALVEDELLLALPIVPAHDPEVCQHP
AGFVVEDEPESSEVEDKRPNPFSVLAQLKRDPNV*

AnnotationID:4096 GeneID:4089

AnnotatorUID: diggins

Modification Date/Time: 2005-04-11 07:07:24

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2971

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8180

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25323

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36080

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4089_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4089

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6332 PA2971_tr translation of PA2971 178 99.99 99.99 0 927.0

174041 gb|AAG06359.1|AE004723_3 (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 178 99.99 99.99 0 927.0

174042 gb|AAN67528.1|AE016381_5 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 178 64.04 75.84 3 609.0

174043 gb|AAO57304.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 178 59.55 72.47 3 571.0

GC ORFID: `47091`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2971`	Glimmer Score:
Start: `2713516`	Stop: `2712980`
Length: `537`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA2971 translation of PA2971`	Homolog Bit Score `361.0`
Other Homologs: `psyr_15may02_Scaffold13_revised_gene2158 (ORF: BLASTX 221.0), t_PA2971 (ORF: GLIMMER)`
GC ORF Sequence
ATGTTGAATGGGCCGATTCCACCTCATATCGATCCGCGCAAGTTGGTCGACCGCGGCGCCACCCTCGAGGGT GTGTACGCGCTCGCCGATATGCCGCGTGTATGCGAGCAACTGACCAGCGATGCCGGTGAGGTGCGCGTGAAG GTTTCCTTCGAGCGCGACCACCAGAAGCTGGCGGTCATGCATATGCAGCTCGATACCGAGGTGAGCATGGTA TGCCAACGCTGCCTGGATGCGGCGGCCATTCCCGTGCATGGCGAATATACCTACGCCATTCTTCGGGAAGGT CAGTCCGCCGACGGTCTGCCGAAGGGGTACGATGCGCTGGAAGTGGGGGAGGAACCCCTGGACCTGCTGGCG CTGGTCGAGGACGAGCTGTTGCTCGCCTTACCCATCGTTCCGGCCCATGACCCCGAAGTATGTCAGCACCCG GCTGGATTCGTCGTCGAAGACGAGCCGGAGTCGAGCGAAGTCGAGGACAAGCGTCCTAATCCGTTCAGCGTA CTGGCACAGTTGAAGCGTGACCCAAACGTTTAG