ViewGene
Locus Name:
GeneID:
Location:

GeneID:4088
TrivialName: PA14_33570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33570
PAO1 Ortholog Locus:PA2406
Sequence Length:561
Protein Length:186
Start: 2954226
Stop: 2953666
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05794.1|AE004668_4 (AE004668) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/186 (98%), Positives = 184/186 (98%)
Sequence:
ATGAGCGTCGAAACCGTCCGCCCGGCCGGCGCCGGCCACGAGACCCTCTACGTACTGCTCGGCAGCGTGCTG
ATCCTGGCCCTCGCCGCCACGGTGGTCGGGCTGCGCCAGCAGTCCCATGAAGCGCAAGCCCTGGACGCCCAC
CAGGTGGACGCCCGGCTCGACCTGAATGCCGCCGAACAGGGCATCTATGCCGACCTGCAGGTCGCCGCCGAA
GACATCCAGGCGCGCCTGGACGACGGCGAAGCCGCGCCCTCCGTCGACGAACTGGCCGCCGAGGGCTTCCCG
CCCTTCGTCGCCGACGTCGCCGCGAGCAGCCGCGGCGAGCACCGCTGGAGCCACGGCGAAACCGCCGGGCGT
CCGAGCTACCTGGGCGTCAGCGGCAAGCCCGGGGTGGCCGGCTCGTTCCTCCTGCTGCTCGACCCCGCCGAA
GTCTGGCTGAAGCCCGCCGCGGCCGCTGCCGGCGCCGTACCGGGCGACGCCCGCGCCCTGGCCGACGCCGGC
TGGCGCCAGGTGGTCAGCCGCTTCGACGCCGGCGTGACCCGTCAGCACCGCCATTGA
Translation:
MSVETVRPAGAGHETLYVLLGSVLILALAATVVGLRQQSHEAQALDAHQVDARLDLNAAEQGIYADLQVAAE
DIQARLDDGEAAPSVDELAAEGFPPFVADVAASSRGEHRWSHGETAGRPSYLGVSGKPGVAGSFLLLLDPAE
VWLKPAAAAAGAVPGDARALADAGWRQVVSRFDAGVTRQHRH*
AnnotationID:4095GeneID:4088
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2406
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8178




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4088
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6331
                           PA2406_tr
                           translation of PA2406
                           186
                           98.92
                           98.92
                           0
                           926.0
     

     
     
174038
                           gb|AAG05794.1|AE004668_4
                           (AE004668) hypothetical protein PA2406 [Pseudomonas aeruginosa PAO1]
                           186
                           98.92
                           98.92
                           0
                           926.0
     

     
     
174039
                           gb|AAN69394.1|AE016576_4
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           194
                           53.60
                           68.55
                           13
                           480.0
     

     
     
174040
                           gb|AAO55659.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           199
                           49.24
                           65.82
                           22
                           449.0
     

     






      

          
GC ORFID: 47090How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2406Glimmer Score: 

          
Start: 1999690Stop: 2000250

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2406 translation of PA2406Homolog Bit Score 361.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene483 (ORF: BLASTX 237.0), t_PA2406 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTCGAAACCGTCCGCCCGGCCGGCGCCGGCCACGAGACCCTCTACGTACTGCTCGGCAGCGTGCTG 
ATCCTGGCCCTCGCCGCCACGGTGGTCGGGCTGCGCCAGCAGTCCCATGAAGCGCAAGCCCTGGACGCCCAC 
CAGGTGGACGCCCGGCTCGACCTGAATGCCGCCGAACAGGGCATCTATGCCGACCTGCAGGTCGCCGCCGAA 
GACATCCAGGCGCGCCTGGACGACGGCGAAGCCGCGCCCTCCGTCGACGAACTGGCCGCCGAGGGCTTCCCG 
CCCTTCGTCGCCGACGTCGCCGCGAGCAGCCGCGGCGAGCACCGCTGGAGCCACGGCGAAACCGCCGGGCGT 
CCGAGCTACCTGGGCGTCAGCGGCAAGCCCGGGGTGGCCGGCTCGTTCCTCCTGCTGCTCGACCCCGCCGAA 
GTCTGGCTGAAGCCCGCCGCGGCCGCTGCCGGCGCCGTACCGGGCGACGCCCGCGCCCTGGCCGACGCCGGC 
TGGCGCCAGGTGGTCAGCCGCTTCGACGCCGGCGTGACCCGTCAGCACCGCCATTGA