ViewGene

Locus Name:
GeneID:
Location:

GeneID:4087
TrivialName: PA14_48470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48470
PAO1 Ortholog Locus:
Sequence Length:912
Protein Length:303
Start: 4309917
Stop: 4309006
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03682.1|AE004467_4 (AE004467) N-carbamoylputrescine amidohydrolase [Pseudomonas aeruginosa PAO1]
Identities = 178/289 (61%), Positives = 218/289 (75%), Gaps = 3/289 (1%)
Sequence:
ATGCGCCACCTGACCCTGGCCACTACCCAGTTCGCCTGTAGCTGGAGTCTCGACGACAATCTCGACCGCGCC
GAGCGCCTGGTCCGCGAAGCGGCTGCCCGGGGCGCGCAACTGGTCCTGTTGCAGGAGCTGTTCGCCACCCCG
TACTTCTGCATCGAGCAGGACCATCGCCATCTGCGCCTCGCCGAAACCTTCCGTGGCAGCCGGGTGCTGGCG
CGCTTTTCCAGCCTGGCGCGGGAGCTTGGCGTAGTCCTGCCGCTCAGCTGGTACGAGCGCGCCGGCAACGCG
CGCTTCAACTCGCTGGCGGTGGCCGACGCCGATGGCCGGTTGCTCGGCGTCTACCGCAAGGCCCACGTCCCC
AACGCCATCGGCTACCAGGAAAAGGAATATTTCAGTCCGGGGGATAGCGGCTTTCGCGTCTGGGACACCGCG
GTCGGCCGTATCGGCGTCGGCATCTGCTGGGACCAGTGGTTTCCCGAGACCGCGCGCTGCCTGGCGCTACTG
GGCGCCGAGGTGCTGCTGTTTCCTACCGCCATCGGCTCCGAGCCTGGCGCCGCGCAGCTGGATTCCCGCGAT
CACTGGCAGATCGCCCAGCGCGGCCAGGCCGCCGCCAATCTGGTACCGCTGGTGGCTGCCAACCGGATCGGC
CGCGAGGTCGCTTGCGGCGACCCGGCGCTGGCCATGCGGTTCTACGGTTCGTCCTTCATCGCCGACCACAAG
GGTGCCTTGCTCGCCGCGGCCGGCCGCGACGAGGAGGCGGTGCTGGTCTGTGGCCTCGACCTCGATGCGATA
GGCGAAGAACGCCTGGCCTGGGGTGTCTATCGTGACCGGCGGCCAGAGCTGTATGGCCCGCTGATGAGCCTG
GACGGGCGTGACCCGGCCAGCCGACACGCCTGGGAGGTGTCCCCATGA
Translation:
MRHLTLATTQFACSWSLDDNLDRAERLVREAAARGAQLVLLQELFATPYFCIEQDHRHLRLAETFRGSRVLA
RFSSLARELGVVLPLSWYERAGNARFNSLAVADADGRLLGVYRKAHVPNAIGYQEKEYFSPGDSGFRVWDTA
VGRIGVGICWDQWFPETARCLALLGAEVLLFPTAIGSEPGAAQLDSRDHWQIAQRGQAAANLVPLVAANRIG
REVACGDPALAMRFYGSSFIADHKGALLAAAGRDEEAVLVCGLDLDAIGEERLAWGVYRDRRPELYGPLMSL
DGRDPASRHAWEVSP*
AnnotationID:4094GeneID:4087
AnnotatorUID: danlee
Modification Date/Time: 2005-10-08 16:04:40
Gene Name:
Confidence Code:3
GeneProduct:putative N-carbamoylputrescine amidohydrolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative carbon-nitrogen hydrolase
Functional Category Confidence Code:5
COGs:COG0388, pfam00795
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|48729337|ref|ZP_00263088.1|  COG0388: Predicted amidohydrolase [Pseudomonas fluorescens PfO-1]
     Length=302
     Score =  457 bits (1177),  Expect = 1e-127
     Identities = 217/291 (74%), Positives = 251/291 (86%), Gaps = 0/291 (0%)

gi|46312042|ref|ZP_00212642.1|  COG0388: Predicted amidohydrolase [Burkholderia cepacia R18194]
     Length=304
     Score =  370 bits (949),  Expect = 4e-101
     Identities = 180/295 (61%), Positives = 226/295 (76%), Gaps = 6/295 (2%)

gi|53717750|ref|YP_106736.1|  putative carbon-nitrogen hydrolase [Burkholderia pseudomallei K96243]
     Length=291
     Score =  364 bits (935),  Expect = 2e-99
     Identities = 177/285 (62%), Positives = 214/285 (75%), Gaps = 3/285 (1%)

gi|53724659|ref|YP_101967.1|  hydrolase, carbon-nitrogen family [Burkholderia mallei ATCC 23344]
     Length=291
     Score =  363 bits (931),  Expect = 5e-99
     Identities = 177/285 (62%), Positives = 213/285 (74%), Gaps = 3/285 (1%)

gi|76580570|gb|ABA50045.1|  hydrolase, carbon-nitrogen family [Burkholderia pseudomallei 1710b]
     Length=291
     Score =  362 bits (930),  Expect = 7e-99
     Identities = 177/285 (62%), Positives = 212/285 (74%), Gaps = 3/285 (1%)
Structural Features:
COG0388, Predicted amidohydrolase [General function prediction only].
             CD-Length = 274 residues,  98.2% aligned
             Score =  156 bits (396), Expect = 2e-39

pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase.
             CD-Length = 174 residues, 100.0% aligned
             Score =  120 bits (301), Expect = 3e-28
Genomic Context:
Comment:
ReferenceID:8176
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25319
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37567
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4087_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4087

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6330 PA0293_tr translation of PA0293 304 58.55 72.03 13 923.0
174013 gb|AAG03682.1|AE004467_4 (AE004467) N-carbamoylputrescine amidohydrolase [Pseudomonas aeruginosa PAO1] 304 58.55 72.03 13 923.0
174014 gb|AAM86874.1|AE013933_11 (AE013933) hypothetical [Yersinia pestis KIM] 303 55.77 70.95 9 906.0
174015 emb|CAC89781.1| (AJ414145) putative carbon-nitrogen hydrolase [Yersinia pestis CO92] 303 55.77 70.95 9 906.0
174016 gb|AAO58816.1| (AE016875) carbon-nitrogen hydrolase family protein [Pseudomonas syringae pv. tomato str. DC3000] 304 52.96 69.07 13 858.0
GC ORFID: 47089How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0293Glimmer Score:
Start: 643991Stop: 644902
Length: 912
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0293 translation of PA0293Homolog Bit Score 361.0
Other Homologs: psyr_15may02_Scaffold14_revised_gene2438 (ORF: BLASTX 337.0), t_PA0293 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCACCTGACCCTGGCCACTACCCAGTTCGCCTGTAGCTGGAGTCTCGACGACAATCTCGACCGCGCC
GAGCGCCTGGTCCGCGAAGCGGCTGCCCGGGGCGCGCAACTGGTCCTGTTGCAGGAGCTGTTCGCCACCCCG
TACTTCTGCATCGAGCAGGACCATCGCCATCTGCGCCTCGCCGAAACCTTCCGTGGCAGCCGGGTGCTGGCG
CGCTTTTCCAGCCTGGCGCGGGAGCTTGGCGTAGTCCTGCCGCTCAGCTGGTACGAGCGCGCCGGCAACGCG
CGCTTCAACTCGCTGGCGGTGGCCGACGCCGATGGCCGGTTGCTCGGCGTCTACCGCAAGGCCCACGTCCCC
AACGCCATCGGCTACCAGGAAAAGGAATATTTCAGTCCGGGGGATAGCGGCTTTCGCGTCTGGGACACCGCG
GTCGGCCGTATCGGCGTCGGCATCTGCTGGGACCAGTGGTTTCCCGAGACCGCGCGCTGCCTGGCGCTACTG
GGCGCCGAGGTGCTGCTGTTTCCTACCGCCATCGGCTCCGAGCCTGGCGCCGCGCAGCTGGATTCCCGCGAT
CACTGGCAGATCGCCCAGCGCGGCCAGGCCGCCGCCAATCTGGTACCGCTGGTGGCTGCCAACCGGATCGGC
CGCGAGGTCGCTTGCGGCGACCCGGCGCTGGCCATGCGGTTCTACGGTTCGTCCTTCATCGCCGACCACAAG
GGTGCCTTGCTCGCCGCGGCCGGCCGCGACGAGGAGGCGGTGCTGGTCTGTGGCCTCGACCTCGATGCGATA
GGCGAAGAACGCCTGGCCTGGGGTGTCTATCGTGACCGGCGGCCAGAGCTGTATGGCCCGCTGATGAGCCTG
GACGGGCGTGACCCGGCCAGCCGACACGCCTGGGAGGTGTCCCCATGA