ViewGene
Locus Name:
GeneID:
Location:

GeneID:4085
TrivialName: PA14_71580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71580
PAO1 Ortholog Locus:PA5423
Sequence Length:549
Protein Length:182
Start: 6377660
Stop: 6377112
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08808.1|AE004955_2 (AE004955) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 178/182 (97%), Positives = 180/182 (98%)
Sequence:
ATGCGCCGCTTCCCGTTCGCCCGCCTGTTGCTGCTCGCCCTGTTGTCCTCACCCCTGGCCCACGCCGAACTG
CCCGAGACCGACTGGCTGGAACTGATGCCGCCGGCCGACCGCAAGGCGCTGGAAGAAATGCCCGACATCATT
CACGACACCCCGGAGGCCGCCGGCACCTTCACCAGCAAGGGTGGCCTGAAGCAGTCGGACCGAAAGATGCCG
GCGGTGATGTATTCGGCCAAGACCGTCGCCAGCCTGGATGGCAAGGCGATCCGCCTCGGCGGCTACCCGGTG
CCGCTGGAGAACGACGCCAAGGGCCGCGTCACCGAATTCTTCCTGGTGCCCTATCCGGGCGCCTGCATCCAC
GTGCCGCCGCCGCCGCCGAACCAGATCGTCCTGGTGCGTTATCCACAGGGGCTGAAGCTGGCCGATATCTAC
ACCCCGCTGTGGGTCAGCGGCACGCTGAAGATCGAGCAGGTGAGCAATGACCTGGCCGATGCCGCCTACGCC
ATCGACAAGGCGCAGGTGAAGGTAGTGGAGGAAGCGGACCTGTAG
Translation:
MRRFPFARLLLLALLSSPLAHAELPETDWLELMPPADRKALEEMPDIIHDTPEAAGTFTSKGGLKQSDRKMP
AVMYSAKTVASLDGKAIRLGGYPVPLENDAKGRVTEFFLVPYPGACIHVPPPPPNQIVLVRYPQGLKLADIY
TPLWVSGTLKIEQVSNDLADAAYAIDKAQVKVVEEADL*
AnnotationID:4092GeneID:4085
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 14:02:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5423
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8172




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25315




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34648




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4085_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4085
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6328
                           PA5423_tr
                           translation of PA5423
                           182
                           97.80
                           98.90
                           0
                           929.0
     

     
     
173984
                           gb|AAG08808.1|AE004955_2
                           (AE004955) hypothetical protein PA5423 [Pseudomonas aeruginosa PAO1]
                           182
                           97.80
                           98.90
                           0
                           929.0
     

     
     
173986
                           gb|AAO58910.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           187
                           71.65
                           83.42
                           10
                           695.0
     

     
     
173985
                           gb|AAN70898.1|AE016734_2
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           194
                           69.58
                           81.95
                           17
                           703.0
     

     
     
6329
                           PA4066_tr
                           translation of PA4066
                           184
                           39.67
                           52.17
                           14
                           301.0
     

     






      

          
GC ORFID: 47087How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5423Glimmer Score: 

          
Start: 5641349Stop: 5640801

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5423 translation of PA5423Homolog Bit Score 362.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4190 (ORF: BLASTX 272.0), t_PA4066 (ORF: BLASTX 119.0), t_PA5423 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCTTCCCGTTCGCCCGCCTGTTGCTGCTCGCCCTGTTGTCCTCACCCCTGGCCCACGCCGAACTG 
CCCGAGACCGACTGGCTGGAACTGATGCCGCCGGCCGACCGCAAGGCGCTGGAAGAAATGCCCGACATCATT 
CACGACACCCCGGAGGCCGCCGGCACCTTCACCAGCAAGGGTGGCCTGAAGCAGTCGGACCGAAAGATGCCG 
GCGGTGATGTATTCGGCCAAGACCGTCGCCAGCCTGGATGGCAAGGCGATCCGCCTCGGCGGCTACCCGGTG 
CCGCTGGAGAACGACGCCAAGGGCCGCGTCACCGAATTCTTCCTGGTGCCCTATCCGGGCGCCTGCATCCAC 
GTGCCGCCGCCGCCGCCGAACCAGATCGTCCTGGTGCGTTATCCACAGGGGCTGAAGCTGGCCGATATCTAC 
ACCCCGCTGTGGGTCAGCGGCACGCTGAAGATCGAGCAGGTGAGCAATGACCTGGCCGATGCCGCCTACGCC 
ATCGACAAGGCGCAGGTGAAGGTAGTGGAGGAAGCGGACCTGTAG