ViewGene
Locus Name:
GeneID:
Location:

GeneID:4084
TrivialName: PA14_69940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69940
PAO1 Ortholog Locus:PA5298
Sequence Length:573
Protein Length:190
Start: 6239955
Stop: 6240527
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08683.1|AE004942_6 (AE004942) xanthine phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 189/190 (99%), Positives = 189/190 (99%)
Sequence:
GTGGACATTCTCAAAGACAAAATCCGCTCGGAAGGCATCGTCCTTTCCGAGCACGTACTCAAGGTCGACGCC
TTTCTCAACCACCAGATCGACCCGCAGCTGATGCAGCAGGTCGGTCACGCGTTCGCCATGCGCTTCCGCGAC
CAGGGCATCACCAAGATCGTCACCATCGAGGCTTCCGGCATCGCCCCGGCGGTCATGGCCGGCCTGGAGCTG
GGCGTCCCGGTGATCTTCGCCCGCAAGTACCAGTCGCTGACCCTGAAGGACAACCTGTACATCTCCAAGGTG
TTCTCCTTCACCAAGCAGACCGAGAGCACCATCGCCATCTCGGCCAAGCACCTGAACGCCCACGACCACGTG
CTGGTGATCGACGACTTCCTCGCCAACGGCCATGCCGCCAAGGCGCTGATCGACCTGATCGGCCAGGCCGGC
GCGAGCATCGCCGGGCTCGGCATCGTCATCGAGAAATCCTTCCAGGATGGCCGCGCCCTGCTGGAAAGCGAA
GGCTACCGGGTCGAGTCCCTGGCCCGGGTGAAATCGCTGGCCGGCGGTCAGGTCGAGTTCCTCGACTGA
Translation:
MDILKDKIRSEGIVLSEHVLKVDAFLNHQIDPQLMQQVGHAFAMRFRDQGITKIVTIEASGIAPAVMAGLEL
GVPVIFARKYQSLTLKDNLYISKVFSFTKQTESTIAISAKHLNAHDHVLVIDDFLANGHAAKALIDLIGQAG
ASIAGLGIVIEKSFQDGRALLESEGYRVESLARVKSLAGGQVEFLD*
AnnotationID:4091GeneID:4084
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 15:03:05
Gene Name:xpt
Confidence Code:2
GeneProduct:xanthine phosphoribosyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0503
Secondary Functional Category(ies):
EC Number:2.4.2.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70830.1|AE016727_6 (AE016793) xanthine phosphoribosyltransferase [Pseudomonas putida
           KT2440]
          Length = 190

 Score =  269 bits (687), Expect = 8e-72
 Identities = 139/190 (73%), Positives = 161/190 (84%)

>gb|AAO53666.1| (AE016856) xanthine phosphoribosyltransferase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 189

 Score =  263 bits (672), Expect = 4e-70
 Identities = 136/188 (72%), Positives = 160/188 (85%)

>emb|CAA58758.1| (X83878) xanthine phosphoribosyltransferase [Bacillus subtilis]
          Length = 194

 Score =  252 bits (643), Expect = 1e-66
 Identities = 129/189 (68%), Positives = 153/189 (80%)






 
Structural Features:
COG0503, Apt, Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 
[Nucleotide transport and metabolism]
CD-Length = 179 residues,  97.8% aligned
Score =  146 bits (371), Expect = 1e-36
Identities = 68/180 (37%), Positives = 90/180 (50%), Gaps = 5/180 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15008




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25313




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34782




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4084_cdd.html


    		




 
URL:

















    ReferenceID:35714




  
Author/Investigator(s):
        Christiansen LC, Schou S, Nygaard P, Saxild HH.





  
Title:
        Xanthine metabolism in Bacillus subtilis: characterization of the xpt-pbuX operon and evidence for purine- and nitrogen-controlled expression of genes involved in xanthine salvage and catabolism.




  
PubMed:
        9098051


MedLine:
        




    
Source:
J Bacteriol. 1997 Apr;179(8):2540-50.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9098051









           
Homologs By Global Alignment 

           

       



     
Gene ID:4084
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6327
                           PA5298_tr
                           translation of PA5298
                           190
                           99.47
                           99.47
                           0
                           928.0
     

     
     
173756
                           gb|AAG08683.1|AE004942_6
                           (AE004942) xanthine phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
                           190
                           98.94
                           99.47
                           0
                           925.0
     

     
     
173757
                           gb|AAN70830.1|AE016727_6
                           (AE016793) xanthine phosphoribosyltransferase [Pseudomonas putida KT2440]
                           190
                           72.63
                           84.73
                           0
                           683.0
     

     
     
173758
                           gb|AAO53666.1|
                           (AE016856) xanthine phosphoribosyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           190
                           71.05
                           84.21
                           1
                           666.0
     

     
     
173761
                           emb|CAB14124.1|
                           (Z99115) xanthine phosphoribosyltransferase [Bacillus subtilis subsp. subtilis str. 168]
                           194
                           65.97
                           78.86
                           4
                           639.0
     

     






      

          
GC ORFID: 47086How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5298Glimmer Score: 

          
Start: 5503644Stop: 5504216

          
Length: 573


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5298 translation of PA5298Homolog Bit Score 362.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3010 (ORF: BLASTX 263.0), t_PA5298 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGACATTCTCAAAGACAAAATCCGCTCGGAAGGCATCGTCCTTTCCGAGCACGTACTCAAGGTCGACGCC 
TTTCTCAACCACCAGATCGACCCGCAGCTGATGCAGCAGGTCGGTCACGCGTTCGCCATGCGCTTCCGCGAC 
CAGGGCATCACCAAGATCGTCACCATCGAGGCTTCCGGCATCGCCCCGGCGGTCATGGCCGGCCTGGAGCTG 
GGCGTCCCGGTGATCTTCGCCCGCAAGTACCAGTCGCTGACCCTGAAGGACAACCTGTACATCTCCAAGGTG 
TTCTCCTTCACCAAGCAGACCGAGAGCACCATCGCCATCTCGGCCAAGCACCTGAACGCCCACGACCACGTG 
CTGGTGATCGACGACTTCCTCGCCAACGGCCATGCCGCCAAGGCGCTGATCGACCTGATCGGCCAGGCCGGC 
GCGAGCATCGCCGGGCTCGGCATCGTCATCGAGAAATCCTTCCAGGATGGCCGCGCCCTGCTGGAAAGCGAA 
GGCTACCGGGTCGAGTCCCTGGCCCGGGTGAAATCGCTGGCCGGCGGTCAGGTCGAGTTCCTCGACTGA