ViewGene
Locus Name:
GeneID:
Location:

GeneID:4083
TrivialName: PA14_61500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61500
PAO1 Ortholog Locus:PA4648
Sequence Length:549
Protein Length:182
Start: 5487031
Stop: 5487579
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08035.1|AE004879_1 (AE004879) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/182 (100%), Positives = 182/182 (100%)
Sequence:
ATGAATAAACGCATTCCGGCAGTCTTGTTGTTCTGTGCCTGCGCCAGCCTGCTGGGCACCGCCCAGGCCGCC
GGTACGCTGATCGGCCAGGTCGGCGTGCAGATGGTCATCGGTGCCGGCTGCACCATCATCAACGGCAGCGTC
AGCGGCGGTATCAACCAGTGGGGAACCCTGGACTTCGGCAGCCATTCCGACCTCACCAACGTGGTCGACGCG
CAGACCGTCGGCACCAGCGGCAATATCCAGATCCAGTGCAGCACCGGCCTGACCCCGAGCCTGACGGTGAAC
GCAGGCCTGCACGCCAGCGGCGGCCAGCGCTACATGCAGAACACCACCACCACCAGCAGCACCATCGCCTAC
AACATCTATTCGGACGCCGCGCGCAGCGCGCTGATCCAAGCCAACACACCGGTGGACATCTCCTCGGTCTCC
ACCGGCACCGCGGTCAACATCCCCCTCTATGGCCGCGTGGTGCCCACCGGACAAAGCACACCCACGCCGACG
GCGGGGACCTACACCGACACCCTGCTGGTCACCATCGCCTGGTAA
Translation:
MNKRIPAVLLFCACASLLGTAQAAGTLIGQVGVQMVIGAGCTIINGSVSGGINQWGTLDFGSHSDLTNVVDA
QTVGTSGNIQIQCSTGLTPSLTVNAGLHASGGQRYMQNTTTTSSTIAYNIYSDAARSALIQANTPVDISSVS
TGTAVNIPLYGRVVPTGQSTPTPTAGTYTDTLLVTIAW*
AnnotationID:4090GeneID:4083
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4648
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5430
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8168




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25311




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4083
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6326
                           PA4648_tr
                           translation of PA4648
                           182
                           99.99
                           99.99
                           0
                           929.0
     

     
     
173755
                           gb|AAG08035.1|AE004879_1
                           (AE004879) hypothetical protein PA4648 [Pseudomonas aeruginosa PAO1]
                           182
                           99.99
                           99.99
                           0
                           929.0
     

     






      

          
GC ORFID: 47085How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4648Glimmer Score: 

          
Start: 4750711Stop: 4751259

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4648 translation of PA4648Homolog Bit Score 362.0

          
Other Homologs:  t_PA4648 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATAAACGCATTCCGGCAGTCTTGTTGTTCTGTGCCTGCGCCAGCCTGCTGGGCACCGCCCAGGCCGCC 
GGTACGCTGATCGGCCAGGTCGGCGTGCAGATGGTCATCGGTGCCGGCTGCACCATCATCAACGGCAGCGTC 
AGCGGCGGTATCAACCAGTGGGGAACCCTGGACTTCGGCAGCCATTCCGACCTCACCAACGTGGTCGACGCG 
CAGACCGTCGGCACCAGCGGCAATATCCAGATCCAGTGCAGCACCGGCCTGACCCCGAGCCTGACGGTGAAC 
GCAGGCCTGCACGCCAGCGGCGGCCAGCGCTACATGCAGAACACCACCACCACCAGCAGCACCATCGCCTAC 
AACATCTATTCGGACGCCGCGCGCAGCGCGCTGATCCAAGCCAACACACCGGTGGACATCTCCTCGGTCTCC 
ACCGGCACCGCGGTCAACATCCCCCTCTATGGCCGCGTGGTGCCCACCGGACAAAGCACACCCACGCCGACG 
GCGGGGACCTACACCGACACCCTGCTGGTCACCATCGCCTGGTAA