ViewGene

Locus Name:
GeneID:
Location:

GeneID:4082
TrivialName: PA14_58300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58300
PAO1 Ortholog Locus:PA4493
Sequence Length:561
Protein Length:186
Start: 5192535
Stop: 5191975
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07881.1|AE004863_1 (AE004863) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 185/186 (99%), Positives = 185/186 (99%)
Sequence:
ATGTCTGAAGAGCTGCTCTTCGAAGGGGAAGAACATCCCCACCTCCTGCTGGTGGACGACGATCCCACCTTT
ACCCGGGTCCTGGCGCGGGCCATGAGCCGTCGCGGCCTGCGGGTCAGCACCGCCGGCTCCGCCGAGGAAGGC
CTGGCGCTGGCCCAGCAGGATACGCCGGACTACGCCGTGCTCGACCTGAAGATGGAAGGCGACTCCGGCCTG
GTGCTGCTGCCGAAGCTGCTGGAGCTGCACGCGGACATGCGGGTGGTGATCCTCACCGGCTATTCCAGCATC
GCCACCGCGGTGGAGGCGATCAAGCGCGGCGCCTGCAACTACCTGTGCAAGCCGGCGGATGCCGATGACGTG
CTGGCCGCGCTGCTCTCCGAGCACGCCGACCTGGACACCCTGGTGCCGGAAAACCCGATGTCGGTGGATCGC
CTGCAATGGGAGCACATCCAGCGCGTGCTCGCCGAGCACGAGGGCAACATCTCCGCCACCGCCCGTGCCCTG
GGCATGCATCGACGGACCTTGCAGCGCAAGCTGCAGAAGCGGCCGGTACGGCGCTGA
Translation:
MSEELLFEGEEHPHLLLVDDDPTFTRVLARAMSRRGLRVSTAGSAEEGLALAQQDTPDYAVLDLKMEGDSGL
VLLPKLLELHADMRVVILTGYSSIATAVEAIKRGACNYLCKPADADDVLAALLSEHADLDTLVPENPMSVDR
LQWEHIQRVLAEHEGNISATARALGMHRRTLQRKLQKRPVRR*
AnnotationID:4089GeneID:4082
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:28
Gene Name:
Confidence Code:3
GeneProduct:putative DNA-binding response regulator
Cell Localization:()
Synonyms:PA4493
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4567,cd00156,pfam00072
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58001.1| (AE016872) DNA-binding response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 187

 Score =  328 bits (841), Expect = 1e-89
 Identities = 166/184 (90%), Positives = 174/184 (94%)

>gb|AAN66513.1|AE016280_5 (AE016777) response regulator [Pseudomonas putida KT2440]
          Length = 186

 Score =  325 bits (834), Expect = 7e-89
 Identities = 167/186 (89%), Positives = 171/186 (91%)
Structural Features:
COG4567, Response regulator consisting of a CheY-like receiver domain 
and a Fis-type HTH domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 182 residues, 100.0% aligned
Score =  256 bits (655), Expect = 2e-69
Identities = 118/183 (64%), Positives = 133/183 (72%), Gaps = 1/183 (0%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues,  96.5% aligned
Score = 88.0 bits (218), Expect = 1e-18
Identities = 42/109 (38%), Positives = 63/109 (57%)

pfam00072, Response_reg, Response regulator receiver domain.
CD-Length = 120 residues,  93.3% aligned
Score = 85.3 bits (211), Expect = 9e-18
Identities = 40/112 (35%), Positives = 63/112 (56%)
Genomic Context:
Comment:
ReferenceID:8166
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25309
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31536
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4082_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4082

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6325 PA4493_tr translation of PA4493 186 99.46 99.46 0 930.0
173718 gb|AAG07881.1|AE004863_1 (AE004863) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 186 99.46 99.46 0 930.0
173720 gb|AAN66513.1|AE016280_5 (AE016777) response regulator [Pseudomonas putida KT2440] 186 89.78 91.93 0 834.0
173719 gb|AAO58001.1| (AE016872) DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] 187 88.77 93.04 1 840.0
173722 gb|AAQ58571.1| (AE016913) two-component response sensor- transcriptional regulatory protein [Chromobacterium violaceum ATCC 12472] 188 53.19 64.89 16 446.0
GC ORFID: 47084How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4493Glimmer Score:
Start: 4456214Stop: 4455654
Length: 561
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4493 translation of PA4493Homolog Bit Score 362.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5439 (ORF: BLASTX 327.0), t_PA4493 (ORF: GLIMMER)
GC ORF Sequence
ATGTCTGAAGAGCTGCTCTTCGAAGGGGAAGAACATCCCCACCTCCTGCTGGTGGACGACGATCCCACCTTT
ACCCGGGTCCTGGCGCGGGCCATGAGCCGTCGCGGCCTGCGGGTCAGCACCGCCGGCTCCGCCGAGGAAGGC
CTGGCGCTGGCCCAGCAGGATACGCCGGACTACGCCGTGCTCGACCTGAAGATGGAAGGCGACTCCGGCCTG
GTGCTGCTGCCGAAGCTGCTGGAGCTGCACGCGGACATGCGGGTGGTGATCCTCACCGGCTATTCCAGCATC
GCCACCGCGGTGGAGGCGATCAAGCGCGGCGCCTGCAACTACCTGTGCAAGCCGGCGGATGCCGATGACGTG
CTGGCCGCGCTGCTCTCCGAGCACGCCGACCTGGACACCCTGGTGCCGGAAAACCCGATGTCGGTGGATCGC
CTGCAATGGGAGCACATCCAGCGCGTGCTCGCCGAGCACGAGGGCAACATCTCCGCCACCGCCCGTGCCCTG
GGCATGCATCGACGGACCTTGCAGCGCAAGCTGCAGAAGCGGCCGGTACGGCGCTGA