ViewGene
Locus Name:
GeneID:
Location:

GeneID:4081
TrivialName: PA14_20510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20510
PAO1 Ortholog Locus:
Sequence Length:975
Protein Length:324
Start: 1762508
Stop: 1763482
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05845.1|AE004673_5 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/335 (59%), Positives = 229/335 (68%), Gaps = 20/335 (5%)
Sequence:
TTGTGGCGACATTCGTATTCTGCGCGTATAACCCGCAAGGATGATAGCTACCTACTTTACCGCGAAGACGGA
AAGGTCTCGGAGTTCACGGGATCGGGAAGCGATCTAACCTCCATCACAGACCTGGGTAGACTCAGCCGGTTA
CCAGGGGGATTTATATATGCCTCCGAACTCAACGACGCGATGGAGTTCGACCAGAATGGAGTACTCATTAAA
CTCACCACCAAGGAAGGTCGCAAGTATCGTGTAGAGCGAGGCGCTAGTCTTACGATTAGCGACGAGCATGGC
AACAAGCTCGTTCTCTCGGAGGGAGCCAACCATCAACTCCTGCGCGCTCAGACAGGGGGTATATCCATTGAG
TACACATACGACAAGGAACAGCGACTCACTTCGGTAACACGAACAGATGGGCAATACAGCACGAAAACACAG
TACCTCTATGACGACCCGAGGAACGGAAAACTACTTACAGGCATCCTGGATAACAACAATCGCCGCTTCGCC
ACCTGGACCTACGACGACCAAGGCCGCGCCATCTCCAGCGTACACGCCAACGGCGCCGAAAAGGTCTCCCTC
GCCTACAACGATGACGGCTCCACCACCGTCACCAACGAATACGGCAAGCAGGCCACCTACCGCTTCCAGGTG
ATCCAGGGCATCAAGCGCATCGTCGCCATCGAAGGCGAACCCTCTCCCAACTGCCCCAGCAGCAATTCCACC
TTTACCTATGACGAACGCGGCCTGCTCAGCAGCAAACGCGACAACAACGGCAACCTGACCACCTACCAGTAC
AGCGCCCGAGGCCTGGAGACCTCGCGCACCGAGGCCGCCGGCACTGCGCAGGCGCGCACCATCACAACCGAC
TGGCACCCGACCCTGTTCCTCCCGGTGCAGGTCAGCGAGCCCGGTCGGATCACCCGCTACCAGTACGACGCC
GAGGGACGCAAGACCGGCGAGACCGTCACCACCCGCTGA
Translation:
MWRHSYSARITRKDDSYLLYREDGKVSEFTGSGSDLTSITDLGRLSRLPGGFIYASELNDAMEFDQNGVLIK
LTTKEGRKYRVERGASLTISDEHGNKLVLSEGANHQLLRAQTGGISIEYTYDKEQRLTSVTRTDGQYSTKTQ
YLYDDPRNGKLLTGILDNNNRRFATWTYDDQGRAISSVHANGAEKVSLAYNDDGSTTVTNEYGKQATYRFQV
IQGIKRIVAIEGEPSPNCPSSNSTFTYDERGLLSSKRDNNGNLTTYQYSARGLETSRTEAAGTAQARTITTD
WHPTLFLPVQVSEPGRITRYQYDAEGRKTGETVTTR*
AnnotationID:4088GeneID:4081
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:01
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
59.1% identical to PA2457.  NOTE: Two other PA14 ORFs with similarity to PA2457:
GeneID = 4406 (49.4%) and GeneID 4178 = (56%) which are adjacent to each other.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15006




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4081
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6324
                           PA2457_tr
                           translation of PA2457
                           335
                           59.10
                           68.35
                           20
                           942.0
     

     
     
173717
                           gb|AAG05845.1|AE004673_5
                           (AE004673) hypothetical protein PA2457 [Pseudomonas aeruginosa PAO1]
                           335
                           59.10
                           68.35
                           20
                           942.0
     

     






      

          
GC ORFID: 47083How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2457Glimmer Score: 

          
Start: 3191424Stop: 3190450

          
Length: 975


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2457 translation of PA2457Homolog Bit Score 362.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7450 (ORF: BLASTX 179.0), t_PA2457 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGTGGCGACATTCGTATTCTGCGCGTATAACCCGCAAGGATGATAGCTACCTACTTTACCGCGAAGACGGA 
AAGGTCTCGGAGTTCACGGGATCGGGAAGCGATCTAACCTCCATCACAGACCTGGGTAGACTCAGCCGGTTA 
CCAGGGGGATTTATATATGCCTCCGAACTCAACGACGCGATGGAGTTCGACCAGAATGGAGTACTCATTAAA 
CTCACCACCAAGGAAGGTCGCAAGTATCGTGTAGAGCGAGGCGCTAGTCTTACGATTAGCGACGAGCATGGC 
AACAAGCTCGTTCTCTCGGAGGGAGCCAACCATCAACTCCTGCGCGCTCAGACAGGGGGTATATCCATTGAG 
TACACATACGACAAGGAACAGCGACTCACTTCGGTAACACGAACAGATGGGCAATACAGCACGAAAACACAG 
TACCTCTATGACGACCCGAGGAACGGAAAACTACTTACAGGCATCCTGGATAACAACAATCGCCGCTTCGCC 
ACCTGGACCTACGACGACCAAGGCCGCGCCATCTCCAGCGTACACGCCAACGGCGCCGAAAAGGTCTCCCTC 
GCCTACAACGATGACGGCTCCACCACCGTCACCAACGAATACGGCAAGCAGGCCACCTACCGCTTCCAGGTG 
ATCCAGGGCATCAAGCGCATCGTCGCCATCGAAGGCGAACCCTCTCCCAACTGCCCCAGCAGCAATTCCACC 
TTTACCTATGACGAACGCGGCCTGCTCAGCAGCAAACGCGACAACAACGGCAACCTGACCACCTACCAGTAC 
AGCGCCCGAGGCCTGGAGACCTCGCGCACCGAGGCCGCCGGCACTGCGCAGGCGCGCACCATCACAACCGAC 
TGGCACCCGACCCTGTTCCTCCCGGTGCAGGTCAGCGAGCCCGGTCGGATCACCCGCTACCAGTACGACGCC 
GAGGGACGCAAGACCGGCGAGACCGTCACCACCCGCTGA