ViewGene

Locus Name:
GeneID:
Location:

GeneID:4080
TrivialName: PA14_48740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48740
PAO1 Ortholog Locus:PA1204
Sequence Length:558
Protein Length:185
Start: 4334456
Stop: 4333899
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04593.1|AE004550_9 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/185 (99%), Positives = 184/185 (99%)
Sequence:
ATGAGCGACGACATCAAGGTATTGGGCATTTCCGGCAGCCTGCGCAGCGGCTCCTACAACAGCGCGGCGCTG
CAGGAGGCGATCGGCCTGGTTCCGCCGGGCATGAGCATCGAGCTGGCGGACATCTCCGGCATCCCGCTGTAC
AACGAGGACGTCTACGCCCTCGGCTTCCCGCCCGCGGTGGAACGCTTCCGCGAGCAGATCCGCGCGGCGGAC
GCGCTGCTGTTCGCCACCCCGGAATACAACTATTCGATGGCCGGGGTGCTGAAGAATGCCATCGACTGGGCC
TCGCGGCCGCCGGAGCAGCCGTTCTTCGGCAAGCCGGCGGCGATCCTCGGCGCCAGCGCCGGGCGTTTCGGC
ACCGCGCGGGCGCAGTATCACCTGCGCCAGACGCTGGTGTTCCTCGACGTTCATCCGCTGAACAAGCCGGAA
GTGATGATCTCCAGCGCGCAGAACGCCTTCGATGCCCAGGGCCGGCTGCTCGACGACAAGGCGCGCGAGCTG
ATCCAGCAGCAGTTGCAGGCCCTGCAGCTATGGGTGCGCCGCCTGCGCGGTTGA
Translation:
MSDDIKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAAD
ALLFATPEYNYSMAGVLKNAIDWASRPPEQPFFGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNKPE
VMISSAQNAFDAQGRLLDDKARELIQQQLQALQLWVRRLRG*
AnnotationID:4087GeneID:4080
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:50
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:yieF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative NADH-dependent reductase
Functional Category Confidence Code:5
COGs:COG0431,pfam03358
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL50015.1| (AF169302) putative NADH-dependent reductase [Burkholderia cepacia]
          Length = 188

 Score =  162 bits (411), Expect = 7e-40
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 3/188 (1%)

>gb|AAL22708.1| (AE008879) putative oxidoreductase [Salmonella typhimurium LT2]
          Length = 194

 Score =  154 bits (390), Expect = 2e-37
 Identities = 87/187 (46%), Positives = 113/187 (60%), Gaps = 3/187 (1%)

>gb|AAN83068.1|AE016769_183 (AE016769) Hypothetical protein yieF [Escherichia coli CFT073]
          Length = 188

 Score =  152 bits (385), Expect = 7e-37
 Identities = 86/187 (45%), Positives = 112/187 (59%), Gaps = 3/187 (1%)

Structural Features:
COG0431, COG0431, Predicted flavoprotein 
CD-Length = 184 residues,  95.1% aligned
Score =  149 bits (377), Expect = 4e-37
Identities = 80/181 (44%), Positives = 101/181 (55%), Gaps = 7/181 (3%)

pfam03358, FMN_red, NADPH-dependent FMN reductase.
CD-Length = 173 residues, 100.0% aligned
Score =  122 bits (308), Expect = 4e-29
Identities = 55/174 (31%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
Genomic Context:
Comment:
ReferenceID:8162
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25305
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37578
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4080_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4080

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6323 PA1204_tr translation of PA1204 185 99.45 99.45 0 930.0
173693 gb|AAG04593.1|AE004550_9 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 185 99.45 99.45 0 930.0
173694 gb|AAQ58207.1| (AE016911) probable NADPH:quinone oxidoreductase [Chromobacterium violaceum ATCC 12472] 186 46.77 58.60 24 422.0
173707 dbj|BAB38073.1| (AP002566) hypothetical protein [Escherichia coli O157:H7] 188 45.74 59.57 3 385.0
173706 gb|AAA62064.1| (L10328) o188 [Escherichia coli] 188 45.74 59.57 3 385.0
GC ORFID: 47082How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1204Glimmer Score:
Start: 619452Stop: 620009
Length: 558
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1204 translation of PA1204Homolog Bit Score 362.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene790 (ORF: BLASTX 141.0), t_PA1204 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGACGACATCAAGGTATTGGGCATTTCCGGCAGCCTGCGCAGCGGCTCCTACAACAGCGCGGCGCTG
CAGGAGGCGATCGGCCTGGTTCCGCCGGGCATGAGCATCGAGCTGGCGGACATCTCCGGCATCCCGCTGTAC
AACGAGGACGTCTACGCCCTCGGCTTCCCGCCCGCGGTGGAACGCTTCCGCGAGCAGATCCGCGCGGCGGAC
GCGCTGCTGTTCGCCACCCCGGAATACAACTATTCGATGGCCGGGGTGCTGAAGAATGCCATCGACTGGGCC
TCGCGGCCGCCGGAGCAGCCGTTCTTCGGCAAGCCGGCGGCGATCCTCGGCGCCAGCGCCGGGCGTTTCGGC
ACCGCGCGGGCGCAGTATCACCTGCGCCAGACGCTGGTGTTCCTCGACGTTCATCCGCTGAACAAGCCGGAA
GTGATGATCTCCAGCGCGCAGAACGCCTTCGATGCCCAGGGCCGGCTGCTCGACGACAAGGCGCGCGAGCTG
ATCCAGCAGCAGTTGCAGGCCCTGCAGCTATGGGTGCGCCGCCTGCGCGGTTGA