ViewGene

Locus Name:
GeneID:
Location:

GeneID:408
TrivialName: PA14_14060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14060
PAO1 Ortholog Locus:PA3860
Sequence Length:1899
Protein Length:632
Start: 1204817
Stop: 1206715
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07247.1|AE004803_3 (AE004803) probable AMP-binding enzyme [Pseudomonas aeruginosa PAO1]
Identities = 627/632 (99%), Positives = 631/632 (99%)
Sequence:
ATGAATCCGTCCCCATCGATCGCCGGGCTGAGCGATATCGAAGCCCTGGAACGCGTGCCGCTGGAACAGCGC
GACCTGCCATCCAGCACCTACGAACTGTTGCAACGCTCGGCCCAGCGCCACGGCCAGCGTATCGCCCTGAGC
TGCCTGCTGCATGGCAGCGCTGCCGAAGAACCGTTGCGGATCAGCTATGCCGAGCTGTTCGCCCGCGTCACC
CAGACCGCCAACGCCTTGCACCGGCTGGGCCTGGAAAGCCACCAGGCGGTGTCCTTCCTGCTGCCCAACCTG
CCGCAGACCCACTACGTGATCTGGGGCGGCGAAGCTGCCGGGATCGTCAATGCGATCAACCCGCTGCTCGAG
CCGGAGCACATCGCCGAGCTGATCCGCGCCTCCAACACCCGGGTGCTGGTGACCCTGGCGCCGTTCCCCGGC
ACCGACCTGTGGCAGAAGGTCGCCGGCCTGCGCGCGCAGCTGCCGGAGCTGTACGCGATCGTCGTGGTCGAT
CCGGCCAACCTGTTGCCGGCGCCGCAGCGCGAGGCGCTCAAGGCCCAGCGCGGGCCGCTGCCGGAGGGCGTG
CTGGACTTCGATACGCTGATCGCCGACTGCCCGGCAGACCGCCTGGAGAGCGGACGGGCGATCCATCCGGAC
GACGTCGCTTCCTATTTCCATACCGGCGGCACCACCGGCACGCCGAAGCTGGCGCCGCACAGCCACTTCAAC
GAGGTGGCGATGGCCGAGATCATGGGCCTGAACGCCGACTACGGGGTGGACGACGTGCTGCTCTGCGGCCTG
CCGCTGTTCCACGTCAACGGCGTGATGGTTACCGGCCTGGCGCCCTTCCATCGCGGCGCCCAGGTGCTCCTG
GCCGGGCCCCAGGGCTACCGCAATCCGACCCTGATCCAGGACTTCTGGAAGCTGGTGGAGCGCTACCGGGTC
ACCAGCTTCAGTGGCGTGCCGACCATCTACGCGGCGTTGCTGCAGGTCCCCAGCGATGGCCGCGACCTGTCC
AGCCTGCGTTTCGCCCTGTGCGGCGCGGCGCCGATGCCGGTGGAGCTGATCCGCCAGTTCGAGGCGCGTACC
GGGCTCAAGGTGATCGAAGGCTACGGCCTCACCGAAGGTACCTGCGGCACCAGTTGCAACCCGCGTGGCGGC
GAGCGCCGGCCGGGTTCGATCGGCCTGCGCCTGCCGTACTGCCAGGTGAAGGTCGCGGTGCTCGACGGCGAG
GGCAATTACCTGCGCGATGCCGCGCCGAACGAGGTGGGCAACCTCTGCCTGAAGGGCCCGACGGTGTTCAAG
GGCTACCTGCAACAGGACCGGAACCGCGATATCTGGGTCGGCGATGGCTGGTTCAATACCGGCGACCTCGGT
CGTATCGACGAGGACGGCTACATCTGGCTCACCGGGCGCAGCAAGGACCTGATCATTCGCGGTGGCCACAAC
ATCGACCCACAGATGATCGAAGAAGCGCTGCACCGGCATCCGGCCGTGGCCCTGGCGGCGGCGGTGGGCAAG
CCGGACGCCAAGGCCGGCGAGCTGCCGGTGGTGTATATCCAGCTCAAGCCCGGCGCCAGCGCCAGCGAGGAA
GAGCTGCTGGAACACGCCAGCCGCCACGTACCGGAGCGCGCGGCGGTGCCCAAGGATGTCTGGCTGATCGAG
AGCATGCCGGTCACCGCGGTGGGCAAGACCTTCAAGCCGGCGCTGCGCCTGGACGCGATCCGCCGGGTGCTG
GAGGAGGAAAGCCGGAGGATCGCCGAGGATATCCGCGTGGAGGTGGTCGCCGACGAGCGCCACGGCCAGCTC
GCCCACCTGCACGTTCCCGCGCTCGACGAAAGACGCCGGGCGGCGCTGGAAGAGCTGCTCGGCGGCTACGCG
CTGAACTACCGGCTGCACGCCGTCTGA
Translation:
MNPSPSIAGLSDIEALERVPLEQRDLPSSTYELLQRSAQRHGQRIALSCLLHGSAAEEPLRISYAELFARVT
QTANALHRLGLESHQAVSFLLPNLPQTHYVIWGGEAAGIVNAINPLLEPEHIAELIRASNTRVLVTLAPFPG
TDLWQKVAGLRAQLPELYAIVVVDPANLLPAPQREALKAQRGPLPEGVLDFDTLIADCPADRLESGRAIHPD
DVASYFHTGGTTGTPKLAPHSHFNEVAMAEIMGLNADYGVDDVLLCGLPLFHVNGVMVTGLAPFHRGAQVLL
AGPQGYRNPTLIQDFWKLVERYRVTSFSGVPTIYAALLQVPSDGRDLSSLRFALCGAAPMPVELIRQFEART
GLKVIEGYGLTEGTCGTSCNPRGGERRPGSIGLRLPYCQVKVAVLDGEGNYLRDAAPNEVGNLCLKGPTVFK
GYLQQDRNRDIWVGDGWFNTGDLGRIDEDGYIWLTGRSKDLIIRGGHNIDPQMIEEALHRHPAVALAAAVGK
PDAKAGELPVVYIQLKPGASASEEELLEHASRHVPERAAVPKDVWLIESMPVTAVGKTFKPALRLDAIRRVL
EEESRRIAEDIRVEVVADERHGQLAHLHVPALDERRRAALEELLGGYALNYRLHAV*
AnnotationID:417GeneID:408
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 08:08:00
Gene Name:
Confidence Code:3
GeneProduct:putative long-chain-fatty-acid-CoA ligase
Cell Localization:()
Synonyms:PA3860
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0318,KOG1176,pfam00501,COG0365
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC50962.1| (AP005955) bll5697 [Bradyrhizobium japonicum USDA 110]
          Length = 635

 Score =  509 bits (1312), Expect = e-143
 Identities = 275/622 (44%), Positives = 368/622 (59%), Gaps = 26/622 (4%)

>emb|CAE40323.1| (BX640425) putative long-chain-fatty-acid-CoA ligase [Bordetella
           parapertussis]
          Length = 625

 Score =  435 bits (1118), Expect = e-121
 Identities = 246/569 (43%), Positives = 329/569 (57%), Gaps = 14/569 (2%)
Structural Features:
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
[Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 534 residues,  99.6% aligned
Score =  378 bits (972), Expect = 2e-105
Identities = 200/571 (35%), Positives = 282/571 (49%), Gaps = 49/571 (8%)

KOG1176, Acyl-CoA synthetase [Lipid transport and metabolism]
CD-Length = 537 residues,  96.8% aligned
Score =  346 bits (889), Expect = 9e-96
Identities = 176/555 (31%), Positives = 272/555 (49%), Gaps = 41/555 (7%)

pfam00501, AMP-binding, AMP-binding enzyme.
CD-Length = 412 residues, 100.0% aligned
Score =  258 bits (661), Expect = 2e-69
Identities = 150/446 (33%), Positives = 208/446 (46%), Gaps = 41/446 (9%)

COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases 
[Lipid metabolism]
CD-Length = 528 residues,  96.0% aligned
Score =  249 bits (638), Expect = 1e-66
Identities = 153/550 (27%), Positives = 225/550 (40%), Gaps = 54/550 (9%)
Genomic Context:
Comment:
ReferenceID:819
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17961
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31703
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:408_cdd.html
URL:
Homologs By Global Alignment
Gene ID:408

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
692 PA3860_tr translation of PA3860 632 99.20 99.84 0 3273.0
31561 gb|AAG07247.1|AE004803_3 (AE004803) probable AMP-binding enzyme [Pseudomonas aeruginosa PAO1] 632 99.20 99.84 0 3273.0
31562 dbj|BAC50962.1| (AP005955) bll5697 [Bradyrhizobium japonicum USDA 110] 657 42.77 57.53 47 1332.0
31563 emb|CAE40323.1| (BX640425) putative long-chain-fatty-acid-CoA ligase [Bordetella parapertussis] 646 39.62 54.02 35 1120.0
31564 emb|CAE31623.1| (BX640440) putative long-chain-fatty-acid-CoA ligase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 646 39.62 53.86 35 1119.0
GC ORFID: 43410How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3860Glimmer Score:
Start: 3749121Stop: 3747223
Length: 1899
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3860 translation of PA3860Homolog Bit Score 1265.0
Other Homologs: t_PA3860 (ORF: GLIMMER)
GC ORF Sequence
ATGAATCCGTCCCCATCGATCGCCGGGCTGAGCGATATCGAAGCCCTGGAACGCGTGCCGCTGGAACAGCGC
GACCTGCCATCCAGCACCTACGAACTGTTGCAACGCTCGGCCCAGCGCCACGGCCAGCGTATCGCCCTGAGC
TGCCTGCTGCATGGCAGCGCTGCCGAAGAACCGTTGCGGATCAGCTATGCCGAGCTGTTCGCCCGCGTCACC
CAGACCGCCAACGCCTTGCACCGGCTGGGCCTGGAAAGCCACCAGGCGGTGTCCTTCCTGCTGCCCAACCTG
CCGCAGACCCACTACGTGATCTGGGGCGGCGAAGCTGCCGGGATCGTCAATGCGATCAACCCGCTGCTCGAG
CCGGAGCACATCGCCGAGCTGATCCGCGCCTCCAACACCCGGGTGCTGGTGACCCTGGCGCCGTTCCCCGGC
ACCGACCTGTGGCAGAAGGTCGCCGGCCTGCGCGCGCAGCTGCCGGAGCTGTACGCGATCGTCGTGGTCGAT
CCGGCCAACCTGTTGCCGGCGCCGCAGCGCGAGGCGCTCAAGGCCCAGCGCGGGCCGCTGCCGGAGGGCGTG
CTGGACTTCGATACGCTGATCGCCGACTGCCCGGCAGACCGCCTGGAGAGCGGACGGGCGATCCATCCGGAC
GACGTCGCTTCCTATTTCCATACCGGCGGCACCACCGGCACGCCGAAGCTGGCGCCGCACAGCCACTTCAAC
GAGGTGGCGATGGCCGAGATCATGGGCCTGAACGCCGACTACGGGGTGGACGACGTGCTGCTCTGCGGCCTG
CCGCTGTTCCACGTCAACGGCGTGATGGTTACCGGCCTGGCGCCCTTCCATCGCGGCGCCCAGGTGCTCCTG
GCCGGGCCCCAGGGCTACCGCAATCCGACCCTGATCCAGGACTTCTGGAAGCTGGTGGAGCGCTACCGGGTC
ACCAGCTTCAGTGGCGTGCCGACCATCTACGCGGCGTTGCTGCAGGTCCCCAGCGATGGCCGCGACCTGTCC
AGCCTGCGTTTCGCCCTGTGCGGCGCGGCGCCGATGCCGGTGGAGCTGATCCGCCAGTTCGAGGCGCGTACC
GGGCTCAAGGTGATCGAAGGCTACGGCCTCACCGAAGGTACCTGCGGCACCAGTTGCAACCCGCGTGGCGGC
GAGCGCCGGCCGGGTTCGATCGGCCTGCGCCTGCCGTACTGCCAGGTGAAGGTCGCGGTGCTCGACGGCGAG
GGCAATTACCTGCGCGATGCCGCGCCGAACGAGGTGGGCAACCTCTGCCTGAAGGGCCCGACGGTGTTCAAG
GGCTACCTGCAACAGGACCGGAACCGCGATATCTGGGTCGGCGATGGCTGGTTCAATACCGGCGACCTCGGT
CGTATCGACGAGGACGGCTACATCTGGCTCACCGGGCGCAGCAAGGACCTGATCATTCGCGGTGGCCACAAC
ATCGACCCACAGATGATCGAAGAAGCGCTGCACCGGCATCCGGCCGTGGCCCTGGCGGCGGCGGTGGGCAAG
CCGGACGCCAAGGCCGGCGAGCTGCCGGTGGTGTATATCCAGCTCAAGCCCGGCGCCAGCGCCAGCGAGGAA
GAGCTGCTGGAACACGCCAGCCGCCACGTACCGGAGCGCGCGGCGGTGCCCAAGGATGTCTGGCTGATCGAG
AGCATGCCGGTCACCGCGGTGGGCAAGACCTTCAAGCCGGCGCTGCGCCTGGACGCGATCCGCCGGGTGCTG
GAGGAGGAAAGCCGGAGGATCGCCGAGGATATCCGCGTGGAGGTGGTCGCCGACGAGCGCCACGGCCAGCTC
GCCCACCTGCACGTTCCCGCGCTCGACGAAAGACGCCGGGCGGCGCTGGAAGAGCTGCTCGGCGGCTACGCG
CTGAACTACCGGCTGCACGCCGTCTGA