ViewGene

Locus Name:
GeneID:
Location:

GeneID:4079
TrivialName: PA14_07600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07600
PAO1 Ortholog Locus:PA0583
Sequence Length:543
Protein Length:180
Start: 654237
Stop: 654779
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03972.1|AE004494_8 (AE004494) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 178/180 (98%), Positives = 178/180 (98%)
Sequence:
ATGTCGCTGATCCCGGTCTACCTCGGCCTCGGCAGCAATGTCGAGCGTGAGCGCCACCTGCGTGCCGGCCTC
GATGCGCTGGCCGGTTTCCTTCATGACCTGCGTTGCTCGCCGGTGTTCGAGAGCGAGCCGGTGGGTATCAAG
AGCGGGCCGTTCTTCAACCTGGTGGTGTCTGCCCGCACCGATCTGCCGCTGGCCGAACTGAGCCTGCGACTC
AAGCACATCGAGGCCGACAATGGCCGCTATGCGCCAGAGCGCAAGGGACTGCCGCTGGATATCGACGTGCTG
TTCTACGGCGACCTGGTGGGCGATTTCGATGGCCTGGTGCTGCCGCGCGCCGAAGTGCTGAAGAATGCTTTC
GTGCTCTGGCCCTTGTCCGAGCTGGCGCCGAACCTGGAGCATCCGGTCGCCCGCCAGCCGCTGGGCGATCTC
TGGCGCGAGACGAGGATCCAGCAGAAGCTCTGGCCGGCGCCATTCGAATGGCGTGGCCAGGCGTTGACTCCC
GAAGCGCTGCTTCAGGCCTTTCCGCGTTCTTCCTTGTAG
Translation:
MSLIPVYLGLGSNVERERHLRAGLDALAGFLHDLRCSPVFESEPVGIKSGPFFNLVVSARTDLPLAELSLRL
KHIEADNGRYAPERKGLPLDIDVLFYGDLVGDFDGLVLPRAEVLKNAFVLWPLSELAPNLEHPVARQPLGDL
WRETRIQQKLWPAPFEWRGQALTPEALLQAFPRSSL*
AnnotationID:4086GeneID:4079
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Cell Localization:()
Synonyms:folk
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0801,cd00483,pfam01288
Secondary Functional Category(ies):
EC Number:2.7.6.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54085.1| (AE016857) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
           pyrophosphokinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 174

 Score =  246 bits (627), Expect = 6e-65
 Identities = 121/174 (69%), Positives = 137/174 (78%)

>gb|AAN66024.1|AE016231_7 (AE016775) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
           pyrophosphokinase [Pseudomonas putida KT2440]
          Length = 169

 Score =  238 bits (607), Expect = 1e-62
 Identities = 119/168 (70%), Positives = 132/168 (78%)

>gb|AAN54359.1|AE015573_6 (AE015573) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
           pyrophosphokinase [Shewanella oneidensis MR-1]
          Length = 167

 Score =  138 bits (347), Expect = 2e-32
 Identities = 72/159 (45%), Positives = 104/159 (65%), Gaps = 4/159 (2%)

Structural Features:
COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 
[Coenzyme metabolism]
CD-Length = 160 residues,  99.4% aligned
Score =  139 bits (351), Expect = 2e-34
Identities = 71/160 (44%), Positives = 89/160 (55%), Gaps = 6/160 (3%)

cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).
CD-Length = 128 residues, 100.0% aligned
Score =  117 bits (295), Expect = 8e-28

pfam01288, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK).
CD-Length = 128 residues, 100.0% aligned
Score = 92.6 bits (230), Expect = 2e-20
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 5/128 (3%)
Genomic Context:
Comment:
other possible gene names: folK-1, folK-2
ReferenceID:8160
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25303
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33881
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4079_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4079

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6322 PA0583_tr translation of PA0583 180 98.88 98.88 0 931.0
173689 gb|AAG03972.1|AE004494_8 (AE004494) hypothetical protein PA0583 [Pseudomonas aeruginosa PAO1] 180 98.88 98.88 0 931.0
173690 gb|AAO54085.1| (AE016857) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Pseudomonas syringae pv. tomato str. DC3000] 180 67.22 76.11 6 627.0
173691 gb|AAN66024.1|AE016231_7 (AE016775) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Pseudomonas putida KT2440] 180 66.11 73.33 11 606.0
173692 gb|AAN54359.1|AE015573_6 (AE015573) 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [Shewanella oneidensis MR-1] 183 40.43 58.46 19 345.0
GC ORFID: 47081How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0583Glimmer Score:
Start: 6455580Stop: 6456122
Length: 543
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0583 translation of PA0583Homolog Bit Score 363.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6677 (ORF: BLASTX 249.0), t_PA0583 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCTGATCCCGGTCTACCTCGGCCTCGGCAGCAATGTCGAGCGTGAGCGCCACCTGCGTGCCGGCCTC
GATGCGCTGGCCGGTTTCCTTCATGACCTGCGTTGCTCGCCGGTGTTCGAGAGCGAGCCGGTGGGTATCAAG
AGCGGGCCGTTCTTCAACCTGGTGGTGTCTGCCCGCACCGATCTGCCGCTGGCCGAACTGAGCCTGCGACTC
AAGCACATCGAGGCCGACAATGGCCGCTATGCGCCAGAGCGCAAGGGACTGCCGCTGGATATCGACGTGCTG
TTCTACGGCGACCTGGTGGGCGATTTCGATGGCCTGGTGCTGCCGCGCGCCGAAGTGCTGAAGAATGCTTTC
GTGCTCTGGCCCTTGTCCGAGCTGGCGCCGAACCTGGAGCATCCGGTCGCCCGCCAGCCGCTGGGCGATCTC
TGGCGCGAGACGAGGATCCAGCAGAAGCTCTGGCCGGCGCCATTCGAATGGCGTGGCCAGGCGTTGACTCCC
GAAGCGCTGCTTCAGGCCTTTCCGCGTTCTTCCTTGTAG