ViewGene
Locus Name:
GeneID:
Location:

GeneID:4076
TrivialName: PA14_56420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56420
PAO1 Ortholog Locus:PA4340
Sequence Length:573
Protein Length:190
Start: 5033043
Stop: 5032471
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07728.1|AE004850_6 (AE004850) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/190 (99%), Positives = 190/190 (100%)
Sequence:
ATGCACAAGTTGATCTGCCTCGGCCTGGCCCTCCTGGCCTTGCCGGTCCAGGCCGCCTGGTACCTGGACTAC
GAGTCGTCGCGACTCAGTTTCATCTCCACCAAGAACGCTACCCTTTCGGAAGTCGGCCGCTTCCTGGTCATG
CACGGCAAGGTCGACGACAAGGGCCAGGCGCGCCTGCGCGTCGAGCTGGACTCGGTGAGCACCGACATCCCG
CTGCGCGACGAACGCATCCGCGAGCATCTGTTCGAGACCAAGCGCTTCGCCGAGGCGGAGATCACCGCCCAG
CTCGACCTGGCGCCGATCGTCGAGCTGGCCGACGGCGTGCAACTGGAAATGCGCCAGCCGGTGACCGTCAGC
CTGCATGGCAAGCGCAAGAGCTACGCCAGCGACCTGTTGGTGACCCGCCTGGACGAGCATCGCTTCCAGGTG
GTGACCCTGTCGCCGCTGGTGCTGGACGCCGCCGACTTCGACCTCGCCCCCGGCATCGAGACCCTGCGCAAG
CTGGCCGGCGCCGGCAGCATCGGGCTCTCGGTGCCGGTCGGCGCCGTGCTGATCTTCACTTCGCGGTGA
Translation:
MHKLICLGLALLALPVQAAWYLDYESSRLSFISTKNATLSEVGRFLVMHGKVDDKGQARLRVELDSVSTDIP
LRDERIREHLFETKRFAEAEITAQLDLAPIVELADGVQLEMRQPVTVSLHGKRKSYASDLLVTRLDEHRFQV
VTLSPLVLDAADFDLAPGIETLRKLAGAGSIGLSVPVGAVLIFTSR*
AnnotationID:4083GeneID:4076
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 17:05:00
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4340
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04264
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57800.1| (AE016871) YceI-like family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 193

 Score =  226 bits (577), Expect = 4e-59
 Identities = 116/190 (61%), Positives = 143/190 (75%)






 
Structural Features:
pfam04264, YceI, YceI like family. E. coli YceI is 
a base-induced periplasmic protein.
CD-Length = 172 residues, 100.0% aligned
Score = 97.3 bits (242), Expect = 1e-21
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 24/185 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8154




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25297




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36691




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4076_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4076
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6319
                           PA4340_tr
                           translation of PA4340
                           190
                           99.47
                           99.99
                           0
                           933.0
     

     
     
173632
                           gb|AAG07728.1|AE004850_6
                           (AE004850) hypothetical protein PA4340 [Pseudomonas aeruginosa PAO1]
                           190
                           99.47
                           99.99
                           0
                           933.0
     

     
     
173633
                           gb|AAO57800.1|
                           (AE016871) YceI-like family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           193
                           60.10
                           74.09
                           3
                           577.0
     

     
     
173634
                           gb|AAN66516.1|AE016280_8
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           193
                           60.10
                           73.57
                           3
                           557.0
     

     






      

          
GC ORFID: 47078How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4340Glimmer Score: 

          
Start: 4296719Stop: 4296147

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4340 translation of PA4340Homolog Bit Score 363.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2076 (ORF: BLASTX 234.0), t_PA4340 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAAGTTGATCTGCCTCGGCCTGGCCCTCCTGGCCTTGCCGGTCCAGGCCGCCTGGTACCTGGACTAC 
GAGTCGTCGCGACTCAGTTTCATCTCCACCAAGAACGCTACCCTTTCGGAAGTCGGCCGCTTCCTGGTCATG 
CACGGCAAGGTCGACGACAAGGGCCAGGCGCGCCTGCGCGTCGAGCTGGACTCGGTGAGCACCGACATCCCG 
CTGCGCGACGAACGCATCCGCGAGCATCTGTTCGAGACCAAGCGCTTCGCCGAGGCGGAGATCACCGCCCAG 
CTCGACCTGGCGCCGATCGTCGAGCTGGCCGACGGCGTGCAACTGGAAATGCGCCAGCCGGTGACCGTCAGC 
CTGCATGGCAAGCGCAAGAGCTACGCCAGCGACCTGTTGGTGACCCGCCTGGACGAGCATCGCTTCCAGGTG 
GTGACCCTGTCGCCGCTGGTGCTGGACGCCGCCGACTTCGACCTCGCCCCCGGCATCGAGACCCTGCGCAAG 
CTGGCCGGCGCCGGCAGCATCGGGCTCTCGGTGCCGGTCGGCGCCGTGCTGATCTTCACTTCGCGGTGA