ViewGene
Locus Name:
GeneID:
Location:

GeneID:4075
TrivialName: PA14_12370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12370
PAO1 Ortholog Locus:PA3978
Sequence Length:549
Protein Length:182
Start: 1066102
Stop: 1065554
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07365.1|AE004816_1 (AE004816) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/182 (100%), Positives = 182/182 (100%)
Sequence:
ATGTTCCGTACCGGCCGCACCCTCGCCCTGGGTTGCCTGTTGATCCTCCAGCCGCTGCTCGCGCAGGCGGGA
GGCAACTCGTTGCTGATTCCAGCGACCGGCCGCTGCGCGCTGAACACCGTTCCCGAAGAATTGCAACAGGCG
CTCGCCGCCTGCCAGCAGGTCGCCAATGGCGGCGACGCCGAGGCGCAATACGAACTGGGCGAATTCTTCTAC
GACGGCGAGCGCATCCCGCGCGACCTCCAGGCCGCCCTCAACTGGTTCGAGAAAGCTTCTCTACAGGGCCAT
GCCCAGGCCCAGTACCACCTCGGCACCATGTTCTTCCGTGGCGAAGGGGTTCCGGCGAACAACGTACAGGCC
TACATCGTGCTGAAGATGGCAGCGGTGAACGGCGCCGAGGACGCCCTGGACAGCGCCGACCTGGTAGCCGAG
CAGATGAACCGCGACGAACTGGACATCGCCACCCGGGTGCTGGGGCAGATCTTCCGCAACTACCTGATCGAA
CTGCAGACTGCCGGCGGCGTCACGCCCTTCGCGCCGCTGCCCTGA
Translation:
MFRTGRTLALGCLLILQPLLAQAGGNSLLIPATGRCALNTVPEELQQALAACQQVANGGDAEAQYELGEFFY
DGERIPRDLQAALNWFEKASLQGHAQAQYHLGTMFFRGEGVPANNVQAYIVLKMAAVNGAEDALDSADLVAE
QMNRDELDIATRVLGQIFRNYLIELQTAGGVTPFAPLP*
AnnotationID:4082GeneID:4075
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 16:04:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3978
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0790,KOG1550,smart00671
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
Weak similarity to some secreted factors.


















    ReferenceID:8152




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25295




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4075
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6318
                           PA3978_tr
                           translation of PA3978
                           182
                           99.99
                           99.99
                           0
                           931.0
     

     
     
173628
                           gb|AAG07365.1|AE004816_1
                           (AE004816) hypothetical protein PA3978 [Pseudomonas aeruginosa PAO1]
                           182
                           99.99
                           99.99
                           0
                           931.0
     

     
     
173629
                           emb|CAA57576.1|
                           (X82072) hypothetical protein [Pseudomonas aeruginosa]
                           182
                           99.99
                           99.99
                           0
                           931.0
     

     
     
173630
                           gb|AAO58231.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           182
                           74.17
                           85.16
                           0
                           700.0
     

     
     
173631
                           gb|AAN70354.1|AE016677_5
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           183
                           71.58
                           80.87
                           3
                           650.0
     

     






      

          
GC ORFID: 47077How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3978Glimmer Score: 

          
Start: 3887836Stop: 3888384

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3978 translation of PA3978Homolog Bit Score 363.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5725 (ORF: BLASTX 272.0), t_PA3978 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCGTACCGGCCGCACCCTCGCCCTGGGTTGCCTGTTGATCCTCCAGCCGCTGCTCGCGCAGGCGGGA 
GGCAACTCGTTGCTGATTCCAGCGACCGGCCGCTGCGCGCTGAACACCGTTCCCGAAGAATTGCAACAGGCG 
CTCGCCGCCTGCCAGCAGGTCGCCAATGGCGGCGACGCCGAGGCGCAATACGAACTGGGCGAATTCTTCTAC 
GACGGCGAGCGCATCCCGCGCGACCTCCAGGCCGCCCTCAACTGGTTCGAGAAAGCTTCTCTACAGGGCCAT 
GCCCAGGCCCAGTACCACCTCGGCACCATGTTCTTCCGTGGCGAAGGGGTTCCGGCGAACAACGTACAGGCC 
TACATCGTGCTGAAGATGGCAGCGGTGAACGGCGCCGAGGACGCCCTGGACAGCGCCGACCTGGTAGCCGAG 
CAGATGAACCGCGACGAACTGGACATCGCCACCCGGGTGCTGGGGCAGATCTTCCGCAACTACCTGATCGAA 
CTGCAGACTGCCGGCGGCGTCACGCCCTTCGCGCCGCTGCCCTGA