ViewGene

Locus Name:
GeneID:
Location:

GeneID:4073
TrivialName: PA14_08280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08280
PAO1 Ortholog Locus:PA0640
Sequence Length:603
Protein Length:200
Start: 707111
Stop: 707713
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04029.1|AE004499_8 (AE004499) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 184/200 (92%), Positives = 192/200 (96%)
Sequence:
ATGAATGACACCCTGAGTCAGGGCCTCACCACCATCCGTCTGTACGGGGTTCTGGGCAAGCGCTTCGGCCGC
ATGCACGGCCGGTTGTTGGAAAGCGGCACGGTACGCGAGGCGATGAGCGCCCTGAAGCACACCATGGAGGGA
TTCGAGACGTTCATGCGCGAGGCGGAATCGAAAGGGCTGACCTTCGCCGTGTTCCGTGGGCGTACCAACCTG
TCCGGCGAGCAACTGGACATGCGCGGACGCGAGGATATCCGCATCGTGCCGTTGGTGATCGGGAGCAAGCAG
TCCGGATTGTTTCAGACGGTATTAGGAGCTGCACTCATTGCCGTAGGTGTCTTCGCAACGAGTCTTACGCTC
GGGACAAGCACGTTTCTGATCTCTGCCGGCGCCAGCATGATGCTCGGTGGCGTCATGCAGATGCTCAGCCCC
CAACCCAAGGGCCTGAAGGGCCGAGAGGCCCCCGAGAACGCCCCCAGCTATGCCTTCGGCGGCCCGGTCAAC
ACCATCGCCCAGGGCCATCCGGTCGGCGTGCTCTACGGCAAGCGCCGCATCGGCGGCGCGGTGATCAGCGCC
GGCATCTATGCCGAGGACCGGCTGTAG
Translation:
MNDTLSQGLTTIRLYGVLGKRFGRMHGRLLESGTVREAMSALKHTMEGFETFMREAESKGLTFAVFRGRTNL
SGEQLDMRGREDIRIVPLVIGSKQSGLFQTVLGAALIAVGVFATSLTLGTSTFLISAGASMMLGGVMQMLSP
QPKGLKGREAPENAPSYAFGGPVNTIAQGHPVGVLYGKRRIGGAVISAGIYAEDRL*
AnnotationID:4080GeneID:4073
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:05
Gene Name:
Confidence Code:3
GeneProduct:putative phage tail assembly protein
Cell Localization:()
Synonyms:PA0640
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06805,COG4723
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN55954.1|AE015733_6 (AE015733) prophage LambdaSo, tail assembly protein I [Shewanella
           oneidensis MR-1]
          Length = 209

 Score =  216 bits (551), Expect = 5e-56
 Identities = 108/189 (57%), Positives = 138/189 (73%), Gaps = 6/189 (3%)

>gb|AAM85750.1|AE013823_1 (AE013823) putative phage tail protein [Yersinia pestis KIM]
          Length = 206

 Score =  200 bits (509), Expect = 4e-51
 Identities = 108/200 (54%), Positives = 144/200 (72%), Gaps = 10/200 (5%)
Structural Features:
pfam06805, Bacteriophage lambda tail assembly protein I. 
CD-Length = 194 residues, 100.0% aligned
Score =  222 bits (566), Expect = 3e-59
Identities = 102/196 (52%), Positives = 121/196 (61%), Gaps = 13/196 (6%)

COG4723, Phage-related protein, tail component
CD-Length = 198 residues, 100.0% aligned
Score =  204 bits (520), Expect = 6e-54
Identities = 79/202 (39%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Genomic Context:
Comment:
ReferenceID:8148
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25291
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34602
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4073_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4073

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6316 PA0640_tr translation of PA0640 200 92.00 96.00 0 935.0
173603 gb|AAG04029.1|AE004499_8 (AE004499) probable bacteriophage protein [Pseudomonas aeruginosa PAO1] 200 92.00 96.00 0 935.0
173605 gb|AAM85750.1|AE013823_1 (AE013823) putative phage tail protein [Yersinia pestis KIM] 208 52.40 70.19 10 517.0
173606 emb|CAC90940.1| (AJ414151) putative phage tail assembly protein [Yersinia pestis CO92] 208 52.40 70.19 10 517.0
173604 gb|AAN55954.1|AE015733_6 (AE015733) prophage LambdaSo, tail assembly protein I [Shewanella oneidensis MR-1] 220 49.54 63.18 31 547.0
GC ORFID: 47075How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0640Glimmer Score:
Start: 6508454Stop: 6509056
Length: 603
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0640 translation of PA0640Homolog Bit Score 364.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7409 (ORF: BLASTX 174.0), t_PA0640 (ORF: GLIMMER)
GC ORF Sequence
ATGAATGACACCCTGAGTCAGGGCCTCACCACCATCCGTCTGTACGGGGTTCTGGGCAAGCGCTTCGGCCGC
ATGCACGGCCGGTTGTTGGAAAGCGGCACGGTACGCGAGGCGATGAGCGCCCTGAAGCACACCATGGAGGGA
TTCGAGACGTTCATGCGCGAGGCGGAATCGAAAGGGCTGACCTTCGCCGTGTTCCGTGGGCGTACCAACCTG
TCCGGCGAGCAACTGGACATGCGCGGACGCGAGGATATCCGCATCGTGCCGTTGGTGATCGGGAGCAAGCAG
TCCGGATTGTTTCAGACGGTATTAGGAGCTGCACTCATTGCCGTAGGTGTCTTCGCAACGAGTCTTACGCTC
GGGACAAGCACGTTTCTGATCTCTGCCGGCGCCAGCATGATGCTCGGTGGCGTCATGCAGATGCTCAGCCCC
CAACCCAAGGGCCTGAAGGGCCGAGAGGCCCCCGAGAACGCCCCCAGCTATGCCTTCGGCGGCCCGGTCAAC
ACCATCGCCCAGGGCCATCCGGTCGGCGTGCTCTACGGCAAGCGCCGCATCGGCGGCGCGGTGATCAGCGCC
GGCATCTATGCCGAGGACCGGCTGTAG