ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4072

TrivialName: PA14_71390

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_71390

PAO1 Ortholog Locus: PA5409

Sequence Length: 561

Protein Length: 186

Start: 6358025

Stop: 6357465

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08794.1|AE004953_8 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 186/186 (100%), Positives = 186/186 (100%)

Sequence:

GTGGAAAACAATCCCCTGTGGGCCGAACTGGGCAAGCACTGGAAACTGGTGGCCCTGCGCGGCGTGGCGGCG
CTGGTGTTCGGCGTCCTGACCCTGCTCTCGCCGGCCCTGGCGCTGACCGTGCTGGTGCTGTTCTGGGGCGCC
TACGCGCTGGTGGACGGGGCGTTCGCCCTGATCGCCGCGTTCAACATGCGCAGCGACGGACAGTTCAACTGG
CCGCTGGCGCTGGTCGGGGTGATCGGCGTGGCGGCCGGCCTGGTTGCGTTCTTCTGGCCGCAACTGACCGCC
ATCGGCCTGCTCCTGATCATCGCCGGCTGGGCGCTGGCGATGGGCATCTTCCAGATCGTCGCGGCGATCCGC
CTGCGCAAGTCGATCCAGAACGAGTGGTGGATGATCCTCTCTGGCGCCATCTCGGTGCTGTTCGGCGTGCTG
ATGATCGCCAACCCCGGCGCCGGGGCGCTGGCGGTGGTCTGGGTGATCGGCGCCTACGCGGTGTTCTTCGGC
GTGCTGCTGGTCATGCTCGCGCTGCGCCTGCGCAAGACTTCGACCCTGAAGGCCTGA

Translation:

MENNPLWAELGKHWKLVALRGVAALVFGVLTLLSPALALTVLVLFWGAYALVDGAFALIAAFNMRSDGQFNW
PLALVGVIGVAAGLVAFFWPQLTAIGLLLIIAGWALAMGIFQIVAAIRLRKSIQNEWWMILSGAISVLFGVL
MIANPGAGALAVVWVIGAYAVFFGVLLVMLALRLRKTSTLKA*

AnnotationID:4079 GeneID:4072

AnnotatorUID: diggins

Modification Date/Time: 2005-03-17 11:11:19

Gene Name:

Confidence Code: 3

GeneProduct: putative membrane protein

Cell Localization: ()

Synonyms: PA5409

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>emb|CAE33768.1| (BX640447) putative membrane protein [Bordetella bronchiseptica]
          Length = 186

 Score =  205 bits (522), Expect = 1e-52
 Identities = 101/176 (57%), Positives = 129/176 (73%)

>emb|CAE37132.1| (BX640428) putative membrane protein [Bordetella parapertussis]
          Length = 186

 Score =  205 bits (522), Expect = 1e-52
 Identities = 101/176 (57%), Positives = 129/176 (73%)

>emb|CAE41512.1| (BX640414) putative membrane protein [Bordetella pertussis]
          Length = 186

 Score =  203 bits (516), Expect = 5e-52
 Identities = 98/169 (57%), Positives = 126/169 (74%)

Structural Features:

Genomic Context:

Comment:

ReferenceID:15004

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25289

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34696

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4072_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4072

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6315 PA5409_tr translation of PA5409 186 99.99 99.99 0 934.0

173597 gb|AAG08794.1|AE004953_8 (AE004953) hypothetical protein PA5409 [Pseudomonas aeruginosa PAO1] 186 99.46 99.99 0 931.0

173598 emb|CAE33768.1| (BX640447) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 186 54.30 70.96 0 517.0

173599 emb|CAE37132.1| (BX640428) putative membrane protein [Bordetella parapertussis] 186 54.30 70.96 0 517.0

173600 emb|CAE41512.1| (BX640414) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 186 53.22 69.89 0 509.0

GC ORFID: `47074`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5409`	Glimmer Score:
Start: `5621714`	Stop: `5621154`
Length: `561`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA5409 translation of PA5409`	Homolog Bit Score `364.0`
Other Homologs: `t_PA5409 (ORF: GLIMMER)`
GC ORF Sequence
GTGGAAAACAATCCCCTGTGGGCCGAACTGGGCAAGCACTGGAAACTGGTGGCCCTGCGCGGCGTGGCGGCG CTGGTGTTCGGCGTCCTGACCCTGCTCTCGCCGGCCCTGGCGCTGACCGTGCTGGTGCTGTTCTGGGGCGCC TACGCGCTGGTGGACGGGGCGTTCGCCCTGATCGCCGCGTTCAACATGCGCAGCGACGGACAGTTCAACTGG CCGCTGGCGCTGGTCGGGGTGATCGGCGTGGCGGCCGGCCTGGTTGCGTTCTTCTGGCCGCAACTGACCGCC ATCGGCCTGCTCCTGATCATCGCCGGCTGGGCGCTGGCGATGGGCATCTTCCAGATCGTCGCGGCGATCCGC CTGCGCAAGTCGATCCAGAACGAGTGGTGGATGATCCTCTCTGGCGCCATCTCGGTGCTGTTCGGCGTGCTG ATGATCGCCAACCCCGGCGCCGGGGCGCTGGCGGTGGTCTGGGTGATCGGCGCCTACGCGGTGTTCTTCGGC GTGCTGCTGGTCATGCTCGCGCTGCGCCTGCGCAAGACTTCGACCCTGAAGGCCTGA