ViewGene
Locus Name:
GeneID:
Location:

GeneID:4071
TrivialName: PA14_40210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40210
PAO1 Ortholog Locus:PA1879
Sequence Length:555
Protein Length:184
Start: 3582626
Stop: 3583180
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05268.1|AE004614_2 (AE004614) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/184 (100%), Positives = 184/184 (100%)
Sequence:
ATGACCGAGCCTCTCCCTTCTTCGTCCCTGGGCCCCGCCCTGCGTCGCTGGCGCCTGCTGCACCGGGTCAAG
CAAACGCATGCCGCCGAATTGCTCGGCGTGGCGCAATCGACCATCTCGCGCTGGGAGTCCGGTACCCAGGCG
CTGCTGGTGGAGGAACGGGCACGCCTGGAGCGTCTGCTCGGCGCCCGCCTGGAAGCCGCCGCCGACCAGGCA
CTGGCCCGCCTGGTCGAGGCCAACCCGCAACCCGTGCACCTGATCTGCGACCTCACCCATCGCTTGCTGGCC
TGTTCGCCGGCACGCGCCGCGCAATTCGGCGTGCCCCTCGGCGAACTGCTCGACCGTTCGCTGTGGCCCTAT
TGCAGCGAGGAAATCCTCCGCCAGGAAGCCACCCTCGAGGAACTCGGCTGGCGCGAACTGCTGGCACCGCCG
GCGCTGGAGTTCGCCAGCGGAGCGAACGCCTCGGCCATCGTGCCGATCCGGCGCAGCCGTTGCCGCTGGACC
CGCATGACCCTCTCGGACGGACGCGCGGTGCGCCTGGTGGAAACCCTCTGA
Translation:
MTEPLPSSSLGPALRRWRLLHRVKQTHAAELLGVAQSTISRWESGTQALLVEERARLERLLGARLEAAADQA
LARLVEANPQPVHLICDLTHRLLACSPARAAQFGVPLGELLDRSLWPYCSEEILRQEATLEELGWRELLAPP
ALEFASGANASAIVPIRRSRCRWTRMTLSDGRAVRLVETL*
AnnotationID:4078GeneID:4071
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1879
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. 
CD-Length = 58 residues,  96.6% aligned
Score = 43.6 bits (103), Expect = 1e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8144




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25287




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38055




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4071_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4071
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6314
                           PA1879_tr
                           translation of PA1879
                           184
                           99.99
                           99.99
                           0
                           935.0
     

     
     
173596
                           gb|AAG05268.1|AE004614_2
                           (AE004614) hypothetical protein PA1879 [Pseudomonas aeruginosa PAO1]
                           184
                           99.99
                           99.99
                           0
                           935.0
     

     






      

          
GC ORFID: 47073How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1879Glimmer Score: 

          
Start: 1371284Stop: 1370730

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1879 translation of PA1879Homolog Bit Score 364.0

          
Other Homologs:  t_PA1879 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAGCCTCTCCCTTCTTCGTCCCTGGGCCCCGCCCTGCGTCGCTGGCGCCTGCTGCACCGGGTCAAG 
CAAACGCATGCCGCCGAATTGCTCGGCGTGGCGCAATCGACCATCTCGCGCTGGGAGTCCGGTACCCAGGCG 
CTGCTGGTGGAGGAACGGGCACGCCTGGAGCGTCTGCTCGGCGCCCGCCTGGAAGCCGCCGCCGACCAGGCA 
CTGGCCCGCCTGGTCGAGGCCAACCCGCAACCCGTGCACCTGATCTGCGACCTCACCCATCGCTTGCTGGCC 
TGTTCGCCGGCACGCGCCGCGCAATTCGGCGTGCCCCTCGGCGAACTGCTCGACCGTTCGCTGTGGCCCTAT 
TGCAGCGAGGAAATCCTCCGCCAGGAAGCCACCCTCGAGGAACTCGGCTGGCGCGAACTGCTGGCACCGCCG 
GCGCTGGAGTTCGCCAGCGGAGCGAACGCCTCGGCCATCGTGCCGATCCGGCGCAGCCGTTGCCGCTGGACC 
CGCATGACCCTCTCGGACGGACGCGCGGTGCGCCTGGTGGAAACCCTCTGA