ViewGene
Locus Name:
GeneID:
Location:

GeneID:4070
TrivialName: PA14_60100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60100
PAO1 Ortholog Locus:
Sequence Length:540
Protein Length:179
Start: 5354049
Stop: 5353510
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84133.1| (AY273869) deoxycytidine triphosphate deaminase [Pseudomonas aeruginosa]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGATTGTCATTGACAAAAATCTAGAACATCTTGTTGCGCAATGCGCTATATGTGAAAAAACTTTATTTGAC
GAGTTTTCTCTCAAGATTCAATTGGGGCATACATATTACGAGCCAAAATCTTTGCCCGCCTCTGCAAGCATT
GTATATGGGTCGCATCCAGCCCCGTCGACGTTTTTTTTGGAACCAAAAGAAATTCAGCAAAATTTGGTGCTG
AAATCCGGTGAGCAAGTCATCACCTGCAGTAAACATCGATACAAAATACCGTTAGATTATTTTGGTCTGGTG
CAAACCAAAGGAACCCTTGCGCGATTGTTCGTGCAGGTAACCTGTAATGACGGTCAGGTAGAGCCGGGGTTC
GACGGGTACGTAACCCTTGAAATCGTCAATATGTCGCCTTGGACGATAGAAATACCGGCCGTGAGCGATATA
GCACAACTTTATTTGGTGAAATGCAGTACCAGCGCATCTGAGCCATACCACGGTCGGTATATGGACGCTGCC
AAAAAAGGACCTACCCTTGCAGTGTTTCGAAAGTAG
Translation:
MIVIDKNLEHLVAQCAICEKTLFDEFSLKIQLGHTYYEPKSLPASASIVYGSHPAPSTFFLEPKEIQQNLVL
KSGEQVITCSKHRYKIPLDYFGLVQTKGTLARLFVQVTCNDGQVEPGFDGYVTLEIVNMSPWTIEIPAVSDI
AQLYLVKCSTSASEPYHGRYMDAAKKGPTLAVFRK*
AnnotationID:4077GeneID:4070
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 08:08:54
Gene Name:
Confidence Code:3
GeneProduct:deoxycytidine triphosphate deaminase
Cell Localization:(1) Cytoplasmic
Synonyms:dtd
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:3.1.-.-
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8142




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17062




  
Author/Investigator(s):
        





  
Title:
        CDD research




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-4070.htm


    		




 
URL:

















    ReferenceID:25285




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4070
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
173595
                           gb|AAP84133.1|
                           (AY273869) deoxycytidine triphosphate deaminase [Pseudomonas aeruginosa]
                           179
                           99.99
                           99.99
                           0
                           937.0
     

     






      

          
GC ORFID: 47072How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL006Glimmer Score: 

          
Start: 4617728Stop: 4617189

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL006 Dtd 179 Homolog: VNG0245G / deoxycytidine triphosphate deaminase / Halobacterium sp. / NRC-1 (AAG18843) translation of RL006Homolog Bit Score 365.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATTGTCATTGACAAAAATCTAGAACATCTTGTTGCGCAATGCGCTATATGTGAAAAAACTTTATTTGAC 
GAGTTTTCTCTCAAGATTCAATTGGGGCATACATATTACGAGCCAAAATCTTTGCCCGCCTCTGCAAGCATT 
GTATATGGGTCGCATCCAGCCCCGTCGACGTTTTTTTTGGAACCAAAAGAAATTCAGCAAAATTTGGTGCTG 
AAATCCGGTGAGCAAGTCATCACCTGCAGTAAACATCGATACAAAATACCGTTAGATTATTTTGGTCTGGTG 
CAAACCAAAGGAACCCTTGCGCGATTGTTCGTGCAGGTAACCTGTAATGACGGTCAGGTAGAGCCGGGGTTC 
GACGGGTACGTAACCCTTGAAATCGTCAATATGTCGCCTTGGACGATAGAAATACCGGCCGTGAGCGATATA 
GCACAACTTTATTTGGTGAAATGCAGTACCAGCGCATCTGAGCCATACCACGGTCGGTATATGGACGCTGCC 
AAAAAAGGACCTACCCTTGCAGTGTTTCGAAAGTAG