ViewGene
Locus Name:
GeneID:
Location:

GeneID:4068
TrivialName: PA14_04790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04790
PAO1 Ortholog Locus:PA0365
Sequence Length:549
Protein Length:182
Start: 424198
Stop: 423650
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03754.1|AE004474_6 (AE004474) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/182 (100%), Positives = 182/182 (100%)
Sequence:
ATGAGCGACACCACTCTCGAAAGCGCCGGCCTGTCCCGACGCAGCCTGATGAAAGTCGGCCTGATCGGCGGC
GCCTTCCTCGCCACCGCGGGCGTCACCGCCAGCCTCACCGGCTGTTCGGCGGAGAAACCGGCGAGCGGCCTG
GAAAAGGTCCGCGAATCCGACCTGCCGTTCCTCCGTGCGCTGCTGCCGGTGATGCTGCTCGGCGCGGTTTCC
GCCGAGCAGATGCCGAAAGCCGTGGAGGGCGCGATCCAGAGCCTCGACCACAACCTGGCGCGGCTCTCCCCG
GAGATGTTCAAGCTCACCCAGCAACTCTTCGACGTGCTCGCCCTGCCGCTCACCCGTGGCCCGCTGACCGGT
ATCTGGGGCAGTTGGGAGAACGCCAGCGGCGACGACGTGCGGGCATTCCTTTCGCGCTGGGAAAACAGCTTC
ATCGGCCTGTTGCGGATGGGCCACAGTTCGCTGATGCAACTGGCGATGATGGCCTGGTACGCCCGCCCCGAG
GCGTGGGCCCATTGTGGCTACCCCGGACCGCCGAAGATCGCTTGA
Translation:
MSDTTLESAGLSRRSLMKVGLIGGAFLATAGVTASLTGCSAEKPASGLEKVRESDLPFLRALLPVMLLGAVS
AEQMPKAVEGAIQSLDHNLARLSPEMFKLTQQLFDVLALPLTRGPLTGIWGSWENASGDDVRAFLSRWENSF
IGLLRMGHSSLMQLAMMAWYARPEAWAHCGYPGPPKIA*
AnnotationID:4075GeneID:4068
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0365
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8138




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4068
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6312
                           PA0365_tr
                           translation of PA0365
                           182
                           99.99
                           99.99
                           0
                           936.0
     

     
     
173589
                           gb|AAG03754.1|AE004474_6
                           (AE004474) hypothetical protein PA0365 [Pseudomonas aeruginosa PAO1]
                           182
                           99.99
                           99.99
                           0
                           936.0
     

     
     
173590
                           gb|AAN70686.1|AE016712_4
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           182
                           54.39
                           66.48
                           21
                           506.0
     

     






      

          
GC ORFID: 47070How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0365Glimmer Score: 

          
Start: 6225540Stop: 6224992

          
Length: 549


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0365 translation of PA0365Homolog Bit Score 365.0

          
Other Homologs:  t_PA0365 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACACCACTCTCGAAAGCGCCGGCCTGTCCCGACGCAGCCTGATGAAAGTCGGCCTGATCGGCGGC 
GCCTTCCTCGCCACCGCGGGCGTCACCGCCAGCCTCACCGGCTGTTCGGCGGAGAAACCGGCGAGCGGCCTG 
GAAAAGGTCCGCGAATCCGACCTGCCGTTCCTCCGTGCGCTGCTGCCGGTGATGCTGCTCGGCGCGGTTTCC 
GCCGAGCAGATGCCGAAAGCCGTGGAGGGCGCGATCCAGAGCCTCGACCACAACCTGGCGCGGCTCTCCCCG 
GAGATGTTCAAGCTCACCCAGCAACTCTTCGACGTGCTCGCCCTGCCGCTCACCCGTGGCCCGCTGACCGGT 
ATCTGGGGCAGTTGGGAGAACGCCAGCGGCGACGACGTGCGGGCATTCCTTTCGCGCTGGGAAAACAGCTTC 
ATCGGCCTGTTGCGGATGGGCCACAGTTCGCTGATGCAACTGGCGATGATGGCCTGGTACGCCCGCCCCGAG 
GCGTGGGCCCATTGTGGCTACCCCGGACCGCCGAAGATCGCTTGA