ViewGene
Locus Name:
GeneID:
Location:

GeneID:4065
TrivialName: PA14_63860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63860
PAO1 Ortholog Locus:PA4830
Sequence Length:540
Protein Length:179
Start: 5692539
Stop: 5693078
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08215.1|AE004896_5 (AE004896) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 178/179 (99%), Positives = 179/179 (100%)
Sequence:
ATGGAACAGCCCGGCCGCGAAGACCGCCTGAATGCCTGGATCGCCACCGAGCGGGCCGCCCGCGCCCGCCTC
GGCGCCAGCGGAACCCTGGAGCTGGCGCAAGTCGCCGCGCTCTCCCCGCAGGAGTTCTTCGACCGCATCGGC
AGCGGCGAGCTGCCCTGCCCGCCCTACGGCGAACTGGTCGACTTCGTTCCCATCGAGTGGTCCGAAGGGCGC
TTCCTGTTCCAGGGCACCCCGGACCGCCGCCACTACAATCCGCTGGGTAGCGTGCACGGCGGCTACGCCGCG
TCGCTGCTGGATTCCTGCATGGGCTGCGCGATCCATACCCGGCTCCAGGCCGGCCAGGGCTATACCACCACC
GACCTGCGGATCAGCTACCTGCGCGCGCTGACCGACAAGGTCGGTCCGGTACGCGCCGAAGGCCGGGTGGTG
CACCTCGGCCGCTCGACGGCGGTCGCCGAGGGCCGGTTGTACGATGTCGACGACCGTCTCTACGCCGTCGGC
TCGACCACCTGCCTGGTCCTGCACATGGCCGGATGA
Translation:
MEQPGREDRLNAWIATERAARARLGASGTLELAQVAALSPQEFFDRIGSGELPCPPYGELVDFVPIEWSEGR
FLFQGTPDRRHYNPLGSVHGGYAASLLDSCMGCAIHTRLQAGQGYTTTDLRISYLRALTDKVGPVRAEGRVV
HLGRSTAVAEGRLYDVDDRLYAVGSTTCLVLHMAG*
AnnotationID:4072GeneID:4065
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4830
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8132




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25275




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35219




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4065_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4065
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6309
                           PA4830_tr
                           translation of PA4830
                           179
                           99.44
                           99.99
                           0
                           938.0
     

     
     
173561
                           gb|AAG08215.1|AE004896_5
                           (AE004896) hypothetical protein PA4830 [Pseudomonas aeruginosa PAO1]
                           179
                           99.44
                           99.99
                           0
                           938.0
     

     
     
173562
                           dbj|BAC46472.1|
                           (AP005939) bll1207 [Bradyrhizobium japonicum USDA 110]
                           184
                           36.95
                           52.71
                           19
                           317.0
     

     
     
173564
                           gb|AAF12283.1|AE001862_109
                           (AE001862) conserved hypothetical protein [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           192
                           35.41
                           47.91
                           37
                           275.0
     

     
     
173565
                           emb|CAE28893.1|
                           (BX572604) Phenylacetic acid degradation-related protein [Rhodopseudomonas palustris CGA009]
                           204
                           35.29
                           45.09
                           38
                           281.0
     

     






      

          
GC ORFID: 47067How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4830Glimmer Score: 

          
Start: 4956219Stop: 4956758

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4830 translation of PA4830Homolog Bit Score 365.0

          
Other Homologs:  t_PA4830 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACAGCCCGGCCGCGAAGACCGCCTGAATGCCTGGATCGCCACCGAGCGGGCCGCCCGCGCCCGCCTC 
GGCGCCAGCGGAACCCTGGAGCTGGCGCAAGTCGCCGCGCTCTCCCCGCAGGAGTTCTTCGACCGCATCGGC 
AGCGGCGAGCTGCCCTGCCCGCCCTACGGCGAACTGGTCGACTTCGTTCCCATCGAGTGGTCCGAAGGGCGC 
TTCCTGTTCCAGGGCACCCCGGACCGCCGCCACTACAATCCGCTGGGTAGCGTGCACGGCGGCTACGCCGCG 
TCGCTGCTGGATTCCTGCATGGGCTGCGCGATCCATACCCGGCTCCAGGCCGGCCAGGGCTATACCACCACC 
GACCTGCGGATCAGCTACCTGCGCGCGCTGACCGACAAGGTCGGTCCGGTACGCGCCGAAGGCCGGGTGGTG 
CACCTCGGCCGCTCGACGGCGGTCGCCGAGGGCCGGTTGTACGATGTCGACGACCGTCTCTACGCCGTCGGC 
TCGACCACCTGCCTGGTCCTGCACATGGCCGGATGA