ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4064

TrivialName: PA14_16210

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_16210

PAO1 Ortholog Locus: PA3726

Sequence Length: 540

Protein Length: 179

Start: 1384936

Stop: 1385475

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07113.1|AE004791_10 (AE004791) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 179/179 (100%), Positives = 179/179 (100%)

Sequence:

ATGGCCCTGCAATCCACGCCCTATAAAGCCGATATTTCCCTCACCGACCTGGACCGCGGGGTCTACGAGACG
TTGCGCCTGACCGTGGCCCGGCACCCCTCCGAGACCGAGGAGCGCCTGGCCGTGCGCTTGCTGGCCTACGTG
CTGTGGTACGGCGAGCAGATCGCCTTCGGGCGTGGCCTGTCGGACGTGGACGAACCGGCGCTCTGGGAAAAG
AGCCTGGACGGCCGGGTCCTGCACTGGATCGAAGTCGGCCAGCCGGACGCCGAGCGCATCACCTGGTGCTCG
CGTCGCTGCGAGCGCTTCAGCCTGCTCGCCTATGGCAACCTGCGGGTCTGGCAGACCAAGGTGCTGGACAGC
GTGCGCAGCCTGAAGAACATCAACGTCGCGGCAGTGCCCCAGGAACCCCTGGAGAGCCTGTCCCGCGACCTG
CCGCGTTCGATCAACTGGACCGTGATGATCAGCGAGGGCACCCTGTTCGTCACCGACGAGAACGGCCAGCAC
GAGTTGCAGCTGGAATGGCTGCAGGGCGAGCGTTGA

Translation:

MALQSTPYKADISLTDLDRGVYETLRLTVARHPSETEERLAVRLLAYVLWYGEQIAFGRGLSDVDEPALWEK
SLDGRVLHWIEVGQPDAERITWCSRRCERFSLLAYGNLRVWQTKVLDSVRSLKNINVAAVPQEPLESLSRDL
PRSINWTVMISEGTLFVTDENGQHELQLEWLQGER*

AnnotationID:4071 GeneID:4064

AnnotatorUID: diggins

Modification Date/Time: 2005-04-22 08:08:05

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3726

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8130

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25273

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:31829

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4064_cdd.html

URL:

Homologs By Global Alignment

Gene ID:4064

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6308 PA3726_tr translation of PA3726 179 99.99 99.99 0 936.0

173555 gb|AAG07113.1|AE004791_10 (AE004791) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 179 99.99 99.99 0 936.0

173557 gb|AAN67098.1|AE016338_8 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 180 72.77 88.33 1 725.0

173556 gb|AAO55008.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 180 72.22 87.77 1 728.0

173558 gb|AAR35468.1| (AE017214) conserved hypothetical protein [Geobacter sulfurreducens PCA] 184 41.84 59.78 5 375.0

GC ORFID: `47066`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3726`	Glimmer Score:
Start: `3569001`	Stop: `3568462`
Length: `540`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3726 translation of PA3726`	Homolog Bit Score `365.0`
Other Homologs: `t_PA3726 (ORF: GLIMMER)`
GC ORF Sequence
ATGGCCCTGCAATCCACGCCCTATAAAGCCGATATTTCCCTCACCGACCTGGACCGCGGGGTCTACGAGACG TTGCGCCTGACCGTGGCCCGGCACCCCTCCGAGACCGAGGAGCGCCTGGCCGTGCGCTTGCTGGCCTACGTG CTGTGGTACGGCGAGCAGATCGCCTTCGGGCGTGGCCTGTCGGACGTGGACGAACCGGCGCTCTGGGAAAAG AGCCTGGACGGCCGGGTCCTGCACTGGATCGAAGTCGGCCAGCCGGACGCCGAGCGCATCACCTGGTGCTCG CGTCGCTGCGAGCGCTTCAGCCTGCTCGCCTATGGCAACCTGCGGGTCTGGCAGACCAAGGTGCTGGACAGC GTGCGCAGCCTGAAGAACATCAACGTCGCGGCAGTGCCCCAGGAACCCCTGGAGAGCCTGTCCCGCGACCTG CCGCGTTCGATCAACTGGACCGTGATGATCAGCGAGGGCACCCTGTTCGTCACCGACGAGAACGGCCAGCAC GAGTTGCAGCTGGAATGGCTGCAGGGCGAGCGTTGA