ViewGene
Locus Name:
GeneID:
Location:

GeneID:4062
TrivialName: PA14_25610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25610
PAO1 Ortholog Locus:PA2972
Sequence Length:579
Protein Length:192
Start: 2240299
Stop: 2239721
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06360.1|AE004723_4 (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 188/192 (97%), Positives = 190/192 (98%)
Sequence:
ATGCCCGACCTGATCCTCGCCTCCAGCTCCCCCTACCGACGCGAACTCCTGACCCGCCTGCGCCTTCCCTTC
GAAAGCGCCAGCCCCGATATCGACGAAAGCCATCGCCCCGGGGAAAGTGCCGAGGAACTGGTGCGCCGCCTT
TCCGCCAGCAAGGCCGAAGCGCTGGCCGGACGCTATCCGCAACACCTGGTGATCGGCTCCGACCAGGTCGCC
GTACTCGATGGCGACATCCTCGGCAAGCCGCACACCCCCGAACGCGCCATCCAGCAGCTACGGGACGCCAGC
GGCAATAGCGTGACCTTCCTCACCGGACTGGCCCTCCTCAACAGCGCCAGCCGGCGCATCCAGGTGGCATGC
GTGCCGTTCACCGTGCACTTCCGCCACCTCGACGAGAGCCGCATCCGCCGCTACGTCGAAGCGGAACGCCCA
TTGGACTGCGCCGGCAGCTTCAAGGCGGAAGGCCTGGGCGTCAGCCTGTTCCGCGCCACCGAAGGAGAGGAC
GCCACCAGCCTGGTAGGGCTGCCCCTGATCCGCCTGGTCGACATGCTCCTCGAGGAAGGCGTCGAAATCCCC
TGA
Translation:
MPDLILASSSPYRRELLTRLRLPFESASPDIDESHRPGESAEELVRRLSASKAEALAGRYPQHLVIGSDQVA
VLDGDILGKPHTPERAIQQLRDASGNSVTFLTGLALLNSASRRIQVACVPFTVHFRHLDESRIRRYVEAERP
LDCAGSFKAEGLGVSLFRATEGEDATSLVGLPLIRLVDMLLEEGVEIP*
AnnotationID:4069GeneID:4062
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative maf protein
Cell Localization:()
Synonyms:maf-1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:putative inhibitor of septum formation
Functional Category Confidence Code:5
COGs:COG0424,cd00555
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57305.1| (AE016869) maf protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 192

 Score =  280 bits (717), Expect = 3e-75
 Identities = 141/192 (73%), Positives = 159/192 (82%)

>gb|AAN67527.1|AE016381_4 (AE016781) maf protein [Pseudomonas putida KT2440]
          Length = 204

 Score =  253 bits (645), Expect = 6e-67
 Identities = 132/192 (68%), Positives = 151/192 (78%)

>gb|AAL20118.1| (AE008751) putative inhibitor of septum formation [Salmonella
           typhimurium LT2]
          Length = 194

 Score =  228 bits (580), Expect = 2e-59
 Identities = 114/188 (60%), Positives = 139/188 (73%)








 
Structural Features:
COG0424, Maf, Nucleotide-binding protein implicated in inhibition of septum formation 
[Cell division and chromosome partitioning]
CD-Length = 193 residues,  98.4% aligned
Score =  211 bits (540), Expect = 3e-56
Identities = 89/192 (46%), Positives = 111/192 (57%), Gaps = 3/192 (1%)

cd00555, Maf, Nucleotide binding protein Maf.
CD-Length = 180 residues, 100.0% aligned
Score =  202 bits (515), Expect = 3e-53
Identities = 84/182 (46%), Positives = 112/182 (61%), Gaps = 3/182 (1%)






   
Genomic Context:






   
Comment:
other possible gene name: yceF


















    ReferenceID:8126




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25269




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36079




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4062_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4062
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6305
                           PA2972_tr
                           translation of PA2972
                           192
                           97.91
                           98.95
                           0
                           938.0
     

     
     
173443
                           gb|AAG06360.1|AE004723_4
                           (AE004723) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           192
                           97.91
                           98.95
                           0
                           938.0
     

     
     
173444
                           gb|AAO57305.1|
                           (AE016869) maf protein [Pseudomonas syringae pv. tomato str. DC3000]
                           192
                           73.43
                           82.81
                           0
                           717.0
     

     
     
173445
                           gb|AAN67527.1|AE016381_4
                           (AE016781) maf protein [Pseudomonas putida KT2440]
                           204
                           64.70
                           74.01
                           12
                           645.0
     

     
     
173446
                           gb|AAL20118.1|
                           (AE008751) putative inhibitor of septum formation [Salmonella typhimurium LT2]
                           195
                           58.97
                           71.79
                           4
                           576.0
     

     






      

          
GC ORFID: 47064How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2972Glimmer Score: 

          
Start: 2713626Stop: 2714204

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2972 translation of PA2972Homolog Bit Score 365.0

          
Other Homologs:  t_PA2972 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGACCTGATCCTCGCCTCCAGCTCCCCCTACCGACGCGAACTCCTGACCCGCCTGCGCCTTCCCTTC 
GAAAGCGCCAGCCCCGATATCGACGAAAGCCATCGCCCCGGGGAAAGTGCCGAGGAACTGGTGCGCCGCCTT 
TCCGCCAGCAAGGCCGAAGCGCTGGCCGGACGCTATCCGCAACACCTGGTGATCGGCTCCGACCAGGTCGCC 
GTACTCGATGGCGACATCCTCGGCAAGCCGCACACCCCCGAACGCGCCATCCAGCAGCTACGGGACGCCAGC 
GGCAATAGCGTGACCTTCCTCACCGGACTGGCCCTCCTCAACAGCGCCAGCCGGCGCATCCAGGTGGCATGC 
GTGCCGTTCACCGTGCACTTCCGCCACCTCGACGAGAGCCGCATCCGCCGCTACGTCGAAGCGGAACGCCCA 
TTGGACTGCGCCGGCAGCTTCAAGGCGGAAGGCCTGGGCGTCAGCCTGTTCCGCGCCACCGAAGGAGAGGAC 
GCCACCAGCCTGGTAGGGCTGCCCCTGATCCGCCTGGTCGACATGCTCCTCGAGGAAGGCGTCGAAATCCCC 
TGA