ViewGene
Locus Name:
GeneID:
Location:

GeneID:4061
TrivialName: PA14_26450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26450
PAO1 Ortholog Locus:PA2910
Sequence Length:570
Protein Length:189
Start: 2304147
Stop: 2304716
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06298.1|AE004717_4 (AE004717) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
GTGAATCCCGTTTCCCTGATCTTCCTCGCCTTCGCCATGTCCACCGATGCCTTTGCCGCGGCCATCGGCAAG
GGCTCCAGCCTGGATCGGCCGCGCCTGTCGGAGGCGCTGCGCACCGGGATAATCTTCGGCGTGATCGAGGCC
ATCACCCCTCTGGTCGGCTGGCTGCTTGGCCAGGCCGCCAGCCAGTTCGTCGCCGACTGGGACCACTGGATC
GCCTTCGTCCTGCTGGTGCTGCTCGGCCTGCACATGATCCACAACGGCCTGCGCGCGGATCATGCGACGGAA
CAGGAAAAGCCCGGCCAGCATTCGTTCTGGATTCTCGCGGTGACGGCGCTGGCCACCAGCATCGACGCGCTG
GCGGTGGGCGTCGGCCTGGCCTTCGTCGACGTCAACATCTTCCTCGCCGCTGGCGCCATCGGCCTGGCCACC
ATGACCATGGTCACCCTCGGCACCATGCTCGGCCGGGCGCTCGGCGCAGTGACCGGCAAGCGCGCGGAGATG
GTCGGCGGGGTGGTGCTGATCCTGGTCGGTGCGACCATTCTCTACGAGCATCTCAGCGCGGCGTGA
Translation:
MNPVSLIFLAFAMSTDAFAAAIGKGSSLDRPRLSEALRTGIIFGVIEAITPLVGWLLGQAASQFVADWDHWI
AFVLLVLLGLHMIHNGLRADHATEQEKPGQHSFWILAVTALATSIDALAVGVGLAFVDVNIFLAAGAIGLAT
MTMVTLGTMLGRALGAVTGKRAEMVGGVVLILVGATILYEHLSAA*
AnnotationID:4068GeneID:4061
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:37
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yebN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1971
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57224.1| (AE016869) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 190

 Score =  290 bits (742), Expect = 3e-78
 Identities = 141/189 (74%), Positives = 163/189 (86%)

>emb|CAC90573.1| (AJ414150) putative membrane protein [Yersinia pestis CO92]
          Length = 189

 Score =  229 bits (584), Expect = 7e-60
 Identities = 113/186 (60%), Positives = 143/186 (76%), Gaps = 1/186 (0%)

>gb|AAN80687.1|AE016761_262 (AE016761) Hypothetical protein yebN [Escherichia coli CFT073]
          Length = 206

 Score =  218 bits (554), Expect = 2e-56
 Identities = 104/185 (56%), Positives = 139/185 (75%)








 
Structural Features:
COG1971, Predicted membrane protein
CD-Length = 190 residues,  99.5% aligned
Score =  187 bits (474), Expect = 9e-49
Identities = 97/190 (51%), Positives = 129/190 (67%), Gaps = 2/190 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15002




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25267




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36137




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4061_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4061
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6304
                           PA2910_tr
                           translation of PA2910
                           189
                           99.99
                           99.99
                           0
                           938.0
     

     
     
173421
                           gb|AAG06298.1|AE004717_4
                           (AE004717) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           189
                           99.47
                           99.99
                           0
                           935.0
     

     
     
173422
                           gb|AAO57224.1|
                           (AE016869) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           190
                           73.68
                           85.78
                           1
                           738.0
     

     
     
173424
                           gb|AAM86110.1|AE013857_9
                           (AE013857) hypothetical protein [Yersinia pestis KIM]
                           190
                           58.94
                           75.26
                           2
                           580.0
     

     
     
173425
                           emb|CAC90573.1|
                           (AJ414150) putative membrane protein [Yersinia pestis CO92]
                           190
                           58.94
                           75.26
                           2
                           580.0
     

     






      

          
GC ORFID: 47063How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2910Glimmer Score: 

          
Start: 2649778Stop: 2649209

          
Length: 570


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2910 translation of PA2910Homolog Bit Score 365.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene658 (ORF: BLASTX 270.0), t_PA2910 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAATCCCGTTTCCCTGATCTTCCTCGCCTTCGCCATGTCCACCGATGCCTTTGCCGCGGCCATCGGCAAG 
GGCTCCAGCCTGGATCGGCCGCGCCTGTCGGAGGCGCTGCGCACCGGGATAATCTTCGGCGTGATCGAGGCC 
ATCACCCCTCTGGTCGGCTGGCTGCTTGGCCAGGCCGCCAGCCAGTTCGTCGCCGACTGGGACCACTGGATC 
GCCTTCGTCCTGCTGGTGCTGCTCGGCCTGCACATGATCCACAACGGCCTGCGCGCGGATCATGCGACGGAA 
CAGGAAAAGCCCGGCCAGCATTCGTTCTGGATTCTCGCGGTGACGGCGCTGGCCACCAGCATCGACGCGCTG 
GCGGTGGGCGTCGGCCTGGCCTTCGTCGACGTCAACATCTTCCTCGCCGCTGGCGCCATCGGCCTGGCCACC 
ATGACCATGGTCACCCTCGGCACCATGCTCGGCCGGGCGCTCGGCGCAGTGACCGGCAAGCGCGCGGAGATG 
GTCGGCGGGGTGGTGCTGATCCTGGTCGGTGCGACCATTCTCTACGAGCATCTCAGCGCGGCGTGA