ViewGene
Locus Name:
GeneID:
Location:

GeneID:4059
TrivialName: PA14_34460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34460
PAO1 Ortholog Locus:PA2331
Sequence Length:561
Protein Length:186
Start: 3064789
Stop: 3065349
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05719.1|AE004659_5 (AE004659) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
ATGTCACGCGTTCCCGTGCTCACCCTGGAAAACGCCCCCGAGGCGGCGCGTCCGTTCCTCCAGACCGCGCTG
AACAACTCGGGTTATATCCCGAATCTGCTCGGCGTGCTGGCCAATGCGCCGGCCGCCCTGGAAACCTACCTC
ACCGTGTCCGGGCTGAACGCCAAGGCCAGCCTCGGCCTGCCCGAGCGGGAAGTGGTGCAACTGGTGGCGGCC
ACCACCCATGGCTGCGACTTCTGCGTTGCCGGGCACACCGCGGTGGCGCGCAACAAGGCGCGCCTGCCGGAG
CCGGTGATCGAGGCCCTGCGCGCCCGCGGCGAACTGCCCGATGCCCGCTACGAAGCCCTGGCCGACTTCACC
CGCGCGGTGATCGCCAGTCGCGGCGCGGTCACCGACGAACAGTTCGAAGCCTTCCGCGCCGCTGGTTTCGAC
CAGGCCCAGGCCCTGGAAGTGATCCTCGGGGTGAGCCTGGCGACGCTCTGCAACTTCGCCAACGTGTTCGCC
CGCACGCCGCTCAATGCCGAGCTGGAGCAATATCGCTGGACCAACCCGCAGGCCTGA
Translation:
MSRVPVLTLENAPEAARPFLQTALNNSGYIPNLLGVLANAPAALETYLTVSGLNAKASLGLPEREVVQLVAA
TTHGCDFCVAGHTAVARNKARLPEPVIEALRARGELPDARYEALADFTRAVIASRGAVTDEQFEAFRAAGFD
QAQALEVILGVSLATLCNFANVFARTPLNAELEQYRWTNPQA*
AnnotationID:4066GeneID:4059
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 15:03:16
Gene Name:
Confidence Code:3
GeneProduct:putative alkylhydroperoxidase
Cell Localization:()
Synonyms:PA2331
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69239.1|AE016558_9 (AE016787) alkylhydroperoxidase AhpD domain protein [Pseudomonas
           putida KT2440]
          Length = 219

 Score =  268 bits (685), Expect = 1e-71
 Identities = 132/180 (73%), Positives = 155/180 (86%)

>gb|AAF41398.1| (AE002450) macrophage infectivity potentiator-related protein
           [Neisseria meningitidis MC58]
          Length = 227

 Score =  179 bits (454), Expect = 8e-45
 Identities = 95/181 (52%), Positives = 128/181 (70%), Gaps = 2/181 (1%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8120




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25263




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32465




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4059_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4059
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6302
                           PA2331_tr
                           translation of PA2331
                           186
                           99.99
                           99.99
                           0
                           936.0
     

     
     
173347
                           gb|AAG05719.1|AE004659_5
                           (AE004659) hypothetical protein PA2331 [Pseudomonas aeruginosa PAO1]
                           186
                           99.99
                           99.99
                           0
                           936.0
     

     
     
173348
                           gb|AAN69239.1|AE016558_9
                           (AE016787) alkylhydroperoxidase AhpD domain protein [Pseudomonas putida KT2440]
                           220
                           60.90
                           71.36
                           35
                           685.0
     

     
     
173349
                           emb|CAB84464.1|
                           (AL162755) hypothetical protein NMA1203 [Neisseria meningitidis Z2491]
                           188
                           50.53
                           68.08
                           8
                           455.0
     

     
     
173357
                           gb|AAN58665.1|AE014936_5
                           (AE014936) conserved hypothetical protein [Streptococcus mutans UA159]
                           188
                           48.93
                           64.89
                           7
                           429.0
     

     






      

          
GC ORFID: 47061How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2331Glimmer Score: 

          
Start: 1889127Stop: 1888567

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2331 translation of PA2331Homolog Bit Score 365.0

          
Other Homologs:  t_PA2331 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCACGCGTTCCCGTGCTCACCCTGGAAAACGCCCCCGAGGCGGCGCGTCCGTTCCTCCAGACCGCGCTG 
AACAACTCGGGTTATATCCCGAATCTGCTCGGCGTGCTGGCCAATGCGCCGGCCGCCCTGGAAACCTACCTC 
ACCGTGTCCGGGCTGAACGCCAAGGCCAGCCTCGGCCTGCCCGAGCGGGAAGTGGTGCAACTGGTGGCGGCC 
ACCACCCATGGCTGCGACTTCTGCGTTGCCGGGCACACCGCGGTGGCGCGCAACAAGGCGCGCCTGCCGGAG 
CCGGTGATCGAGGCCCTGCGCGCCCGCGGCGAACTGCCCGATGCCCGCTACGAAGCCCTGGCCGACTTCACC 
CGCGCGGTGATCGCCAGTCGCGGCGCGGTCACCGACGAACAGTTCGAAGCCTTCCGCGCCGCTGGTTTCGAC 
CAGGCCCAGGCCCTGGAAGTGATCCTCGGGGTGAGCCTGGCGACGCTCTGCAACTTCGCCAACGTGTTCGCC 
CGCACGCCGCTCAATGCCGAGCTGGAGCAATATCGCTGGACCAACCCGCAGGCCTGA