ViewGene
Locus Name:
GeneID:
Location:

GeneID:4057
TrivialName: PA14_47610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47610
PAO1 Ortholog Locus:PA1283
Sequence Length:561
Protein Length:186
Start: 4240408
Stop: 4239848
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04672.1|AE004558_1 (AE004558) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 186/186 (100%), Positives = 186/186 (100%)
Sequence:
ATGGGACGCCGACGAACGATCGACCGCGACCAGTTGCTCGATGCCGCCGAGGCGGTGATCGCCCGCGAGGGC
GCGGCCGGCCTGACCATCGATGCGGTGGCGAAGGAAATGGGCATCACCAAGGGCGGCGTGCAGTACTGCTTC
GGTACCAAGGACGCGCTGATCGACGCGATCTTCGAGCGCTGGGGCAAGGCCTACGACAGCCTGTTCGAAGCG
GTGGCGGGGAAGCAGCCGACGCCGCTGACGCGGGTTCGCGCGCATGCCGAGGCGACCCAGCGTTCGGACGAG
TTGTCCAGCAGCAAGGCGGCGGCGCTGATGGCGGCGCTGATCCAGACGCCCGAGCACCTGGAGGGCAGCAAC
CAGTGGTATCGCAGCCGGTTGGAAGGCCTGGACCTGTCCGCACCCGAGGGGCGCCGTGCGCGCCTGGCGTTC
CTGGCGGTGGAGGGCGCCTTCATGTTGCGCTACTTCCGCCTGATGGACATTGGCCAGGACGAGTGGGACTCG
ATGCTCGACGACGTTCGTGCGTTGTTGCTGACGGCGGCTGGCGCCAGCGGAGACTGA
Translation:
MGRRRTIDRDQLLDAAEAVIAREGAAGLTIDAVAKEMGITKGGVQYCFGTKDALIDAIFERWGKAYDSLFEA
VAGKQPTPLTRVRAHAEATQRSDELSSSKAAALMAALIQTPEHLEGSNQWYRSRLEGLDLSAPEGRRARLAF
LAVEGAFMLRYFRLMDIGQDEWDSMLDDVRALLLTAAGASGD*
AnnotationID:4064GeneID:4057
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 18:06:43
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1283
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE33880.1| (BX640447) putative transcriptional regulator [Bordetella
           bronchiseptica]
          Length = 181

 Score =  239 bits (611), Expect = 5e-63
 Identities = 111/180 (61%), Positives = 150/180 (83%)

>emb|CAE42592.1| (BX640418) putative transcriptional regulator [Bordetella
           pertussis]
          Length = 181

 Score =  239 bits (611), Expect = 5e-63
 Identities = 111/180 (61%), Positives = 150/180 (83%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 46.9 bits (112), Expect = 1e-06
Identities = 17/47 (36%), Positives = 28/47 (59%)







   
Genomic Context:






   
Comment:


















    ReferenceID:8116




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25259




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37503




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4057_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4057
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6300
                           PA1283_tr
                           translation of PA1283
                           186
                           99.99
                           99.99
                           0
                           936.0
     

     
     
173338
                           gb|AAG04672.1|AE004558_1
                           (AE004558) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           186
                           99.99
                           99.99
                           0
                           936.0
     

     
     
173339
                           emb|CAE33880.1|
                           (BX640447) putative transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           186
                           59.67
                           80.64
                           5
                           610.0
     

     
     
173340
                           emb|CAE42592.1|
                           (BX640418) putative transcriptional regulator [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           186
                           59.67
                           80.64
                           5
                           610.0
     

     
     
173341
                           emb|CAE37021.1|
                           (BX640428) putative transcriptional regulator [Bordetella parapertussis]
                           186
                           55.37
                           74.73
                           16
                           565.0
     

     






      

          
GC ORFID: 47059How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1283Glimmer Score: 

          
Start: 713501Stop: 714061

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1283 translation of PA1283Homolog Bit Score 365.0

          
Other Homologs:  t_PA1283 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGACGCCGACGAACGATCGACCGCGACCAGTTGCTCGATGCCGCCGAGGCGGTGATCGCCCGCGAGGGC 
GCGGCCGGCCTGACCATCGATGCGGTGGCGAAGGAAATGGGCATCACCAAGGGCGGCGTGCAGTACTGCTTC 
GGTACCAAGGACGCGCTGATCGACGCGATCTTCGAGCGCTGGGGCAAGGCCTACGACAGCCTGTTCGAAGCG 
GTGGCGGGGAAGCAGCCGACGCCGCTGACGCGGGTTCGCGCGCATGCCGAGGCGACCCAGCGTTCGGACGAG 
TTGTCCAGCAGCAAGGCGGCGGCGCTGATGGCGGCGCTGATCCAGACGCCCGAGCACCTGGAGGGCAGCAAC 
CAGTGGTATCGCAGCCGGTTGGAAGGCCTGGACCTGTCCGCACCCGAGGGGCGCCGTGCGCGCCTGGCGTTC 
CTGGCGGTGGAGGGCGCCTTCATGTTGCGCTACTTCCGCCTGATGGACATTGGCCAGGACGAGTGGGACTCG 
ATGCTCGACGACGTTCGTGCGTTGTTGCTGACGGCGGCTGGCGCCAGCGGAGACTGA