ViewGene

Locus Name:
GeneID:
Location:

GeneID:4056
TrivialName: PA14_69010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69010
PAO1 Ortholog Locus:PA5225
Sequence Length:555
Protein Length:184
Start: 6155790
Stop: 6155236
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08610.1|AE004935_7 (AE004935) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/184 (100%), Positives = 184/184 (100%)
Sequence:
ATGTCCACTCAGAATTCCGCCTACAGCGCCTTTTCCTCCCTTCTCGCCGAGGCGGCCATGCCGGTCTCGCCG
GCCGAGCTGCACGGCCATCTGCTGGGTCGGGTCTGCGCCGGCGCCGGCTTCGACGAGGCCGCCTGGCAACAC
GCTGCCGCCGAACTGCTCGGCGGCGCGCCGGGCGAACGACTCAAGGCCGCGTTGTCCGGCCTGCTCGGCATG
GTCCGGCAGGACTTTTCCGCCGGCGAGGTCGCCGTCGTCATGCTCCTGCCCGACGACGAAACCCCGCTCGCC
CAGCGCACCGAGGCGCTCGGCCAATGGTGCCAGGGTTTCCTCGCCGGCTTCGGCCTCACCGCCCGCGAAGGC
AGCCTGACCGGCGAGGCCGAGGAAGTGCTGCAGGACATGGCCGCCATCGCCCAGGTCCAGGGCCAGCTGGAA
GACAGCGAGGATGGCGAGACGGACTATATGGAAGTCATGGAATACCTGCGGGTCGCTCCGCTGCTGCTGTTC
GCCGAGTGCGGCAAGCCGCTGGAGCCCGCTCCCAAGCCTTCACTGCACTGA
Translation:
MSTQNSAYSAFSSLLAEAAMPVSPAELHGHLLGRVCAGAGFDEAAWQHAAAELLGGAPGERLKAALSGLLGM
VRQDFSAGEVAVVMLLPDDETPLAQRTEALGQWCQGFLAGFGLTAREGSLTGEAEEVLQDMAAIAQVQGQLE
DSEDGETDYMEVMEYLRVAPLLLFAECGKPLEPAPKPSLH*
AnnotationID:4063GeneID:4056
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5225
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8114
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25257
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4056

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6299 PA5225_tr translation of PA5225 184 99.99 99.99 0 939.0
173335 gb|AAG08610.1|AE004935_7 (AE004935) hypothetical protein PA5225 [Pseudomonas aeruginosa PAO1] 184 99.99 99.99 0 939.0
173336 gb|AAO58650.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 184 60.32 71.73 0 554.0
173337 gb|AAN70766.1|AE016720_9 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 184 59.23 73.91 0 552.0
GC ORFID: 47058How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5225Glimmer Score:
Start: 5419477Stop: 5418923
Length: 555
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5225 translation of PA5225Homolog Bit Score 366.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3228 (ORF: BLASTX 213.0), t_PA5225 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCACTCAGAATTCCGCCTACAGCGCCTTTTCCTCCCTTCTCGCCGAGGCGGCCATGCCGGTCTCGCCG
GCCGAGCTGCACGGCCATCTGCTGGGTCGGGTCTGCGCCGGCGCCGGCTTCGACGAGGCCGCCTGGCAACAC
GCTGCCGCCGAACTGCTCGGCGGCGCGCCGGGCGAACGACTCAAGGCCGCGTTGTCCGGCCTGCTCGGCATG
GTCCGGCAGGACTTTTCCGCCGGCGAGGTCGCCGTCGTCATGCTCCTGCCCGACGACGAAACCCCGCTCGCC
CAGCGCACCGAGGCGCTCGGCCAATGGTGCCAGGGTTTCCTCGCCGGCTTCGGCCTCACCGCCCGCGAAGGC
AGCCTGACCGGCGAGGCCGAGGAAGTGCTGCAGGACATGGCCGCCATCGCCCAGGTCCAGGGCCAGCTGGAA
GACAGCGAGGATGGCGAGACGGACTATATGGAAGTCATGGAATACCTGCGGGTCGCTCCGCTGCTGCTGTTC
GCCGAGTGCGGCAAGCCGCTGGAGCCCGCTCCCAAGCCTTCACTGCACTGA