ViewGene

Locus Name:
GeneID:
Location:

GeneID:4054
TrivialName: PA14_60590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60590
PAO1 Ortholog Locus:PA4580
Sequence Length:555
Protein Length:184
Start: 5401584
Stop: 5401030
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07968.1|AE004871_8 (AE004871) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/184 (98%), Positives = 182/184 (98%)
Sequence:
ATGAGCGAGATAATGGACGTCGAGCGGCTGCGCCAGCGCTGCGCGGCCGGCGAAAGCTTCAAGTACCTGTAT
TTCTGGGGACATCGTCCGGCGACGGATGACAAGGTCGGCAAGAGCTGTTTCAGCCAGTGGTACGAGGCTTCG
TTCAAGCTCGACGGGGTGCGCTACGCCAGCGCCGAGCATTACATGATGGCGGCCAAGGCACGCTTGTTCGAC
GACTCCAGGCTGCTCGAGCGCATCCTGGCGGCGCGCAGCCCAGGCGAGGCGAAGGCCCTCGGCCGCGAAGTC
GCCGGCTTCGACGAGGCACGCTGGAACGCCGAGCGGGTGGGAATCGTGATCGAAGGCAACCTCGGCAAGTTC
GGCCAGAACGCTTCGCTGAAGAAATACCTTCTGGGCACCGCCGACCGGGTGCTGGTCGAGGCCAGCCCGGTG
GACGCGATCTGGGGCATCGGCCTGGCCGCGAGCGATCCCCTGGCAGCCGAGCCGGCGACCTGGCAAGGCCTC
AACCTGCTCGGCTTCGCCCTGATGGAGGTGCGCCGGAGGCTGGCTCAGTAG
Translation:
MSEIMDVERLRQRCAAGESFKYLYFWGHRPATDDKVGKSCFSQWYEASFKLDGVRYASAEHYMMAAKARLFD
DSRLLERILAARSPGEAKALGREVAGFDEARWNAERVGIVIEGNLGKFGQNASLKKYLLGTADRVLVEASPV
DAIWGIGLAASDPLAAEPATWQGLNLLGFALMEVRRRLAQ*
AnnotationID:4061GeneID:4054
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 10:10:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4580
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8110
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25253
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31638
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4054_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4054

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6296 PA4580_tr translation of PA4580 184 98.91 98.91 0 940.0
173323 gb|AAG07968.1|AE004871_8 (AE004871) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 184 98.91 98.91 0 940.0
173324 dbj|BAC70304.1| (AP005031) hypothetical protein [Streptomyces avermitilis MA-4680] 195 52.82 64.10 11 530.0
173326 dbj|BAB79866.1| (AP003185) conserved hypothetical protein [Clostridium perfringens str. 13] 187 48.66 63.10 7 453.0
173325 emb|CAA19887.1| (AL939124) conserved hypothetical protein SC6A9.02 [Streptomyces coelicolor A3(2)] 213 48.35 57.74 29 507.0
GC ORFID: 47056How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4580Glimmer Score:
Start: 4665264Stop: 4664710
Length: 555
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4580 translation of PA4580Homolog Bit Score 366.0
Other Homologs: t_PA4580 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAGATAATGGACGTCGAGCGGCTGCGCCAGCGCTGCGCGGCCGGCGAAAGCTTCAAGTACCTGTAT
TTCTGGGGACATCGTCCGGCGACGGATGACAAGGTCGGCAAGAGCTGTTTCAGCCAGTGGTACGAGGCTTCG
TTCAAGCTCGACGGGGTGCGCTACGCCAGCGCCGAGCATTACATGATGGCGGCCAAGGCACGCTTGTTCGAC
GACTCCAGGCTGCTCGAGCGCATCCTGGCGGCGCGCAGCCCAGGCGAGGCGAAGGCCCTCGGCCGCGAAGTC
GCCGGCTTCGACGAGGCACGCTGGAACGCCGAGCGGGTGGGAATCGTGATCGAAGGCAACCTCGGCAAGTTC
GGCCAGAACGCTTCGCTGAAGAAATACCTTCTGGGCACCGCCGACCGGGTGCTGGTCGAGGCCAGCCCGGTG
GACGCGATCTGGGGCATCGGCCTGGCCGCGAGCGATCCCCTGGCAGCCGAGCCGGCGACCTGGCAAGGCCTC
AACCTGCTCGGCTTCGCCCTGATGGAGGTGCGCCGGAGGCTGGCTCAGTAG