ViewGene
Locus Name:
GeneID:
Location:

GeneID:4052
TrivialName: PA14_16560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16560
PAO1 Ortholog Locus:PA3698
Sequence Length:552
Protein Length:183
Start: 1418127
Stop: 1418678
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07086.1|AE004789_6 (AE004789) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 179/183 (97%), Positives = 182/183 (99%)
Sequence:
ATGAAAGCCTGGCGTTGCCTGGTGGTCCTGAGTTTCCTGCTGTTGGGCGGTTGCCTGGTCACCTTCAAGGAG
CCGATACCGCCGCGCGAGGCGGCGCCGAGCCACCTGCTCGGGACCTGGAGCCGCGAGAACGAGTGGAAGGAA
GAACAATTCCTGGAGATCACCCGTTCCGGCAGCAATGTCTACCGCGCGGTCAGCTACGTGGACAGCAAGGAC
AACACCGAGAGCCTGGAGGACTACGGCTTCACCGTCTCCCACCAGGGCAAGCGCTGGTACCTGTCGGCCGGC
CTGCCGAAGAGCCTGGGCGGCAACTTCGTCATCGCCGGCTTCGAGATCACCGACGGCGACGAACTGGTGATC
TACAACCTCGACGTCGAGCGCATCGTCGAGGACCTCGGCGCCGGCCAGCTCGACGGCGAGACCGTCGACAGC
GAGCAGGGCAAGGGCGCGCTGGTGCGCAGCCCGCTGGCGAAGGTCTTCGACTACCTGAACGATCCCGCCAAC
TCCGACGTGTTCGTCGAGGCCGCCCGCTTCCAGCGGGTCACCCAATGA
Translation:
MKAWRCLVVLSFLLLGGCLVTFKEPIPPREAAPSHLLGTWSRENEWKEEQFLEITRSGSNVYRAVSYVDSKD
NTESLEDYGFTVSHQGKRWYLSAGLPKSLGGNFVIAGFEITDGDELVIYNLDVERIVEDLGAGQLDGETVDS
EQGKGALVRSPLAKVFDYLNDPANSDVFVEAARFQRVTQ*
AnnotationID:4059GeneID:4052
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:45
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3698
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67119.1|AE016341_2 (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 182

 Score =  199 bits (507), Expect = 5e-51
 Identities = 102/183 (55%), Positives = 130/183 (71%), Gaps = 7/183 (3%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8106




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25249




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4052
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6294
                           PA3698_tr
                           translation of PA3698
                           183
                           97.81
                           99.45
                           0
                           939.0
     

     
     
173305
                           gb|AAG07086.1|AE004789_6
                           (AE004789) hypothetical protein PA3698 [Pseudomonas aeruginosa PAO1]
                           183
                           97.81
                           99.45
                           0
                           939.0
     

     
     
173306
                           gb|AAN67119.1|AE016341_2
                           (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
                           186
                           54.83
                           70.43
                           7
                           512.0
     

     






      

          
GC ORFID: 47054How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3698Glimmer Score: 

          
Start: 3535810Stop: 3535259

          
Length: 552


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3698 translation of PA3698Homolog Bit Score 366.0

          
Other Homologs:  t_PA3698 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCCTGGCGTTGCCTGGTGGTCCTGAGTTTCCTGCTGTTGGGCGGTTGCCTGGTCACCTTCAAGGAG 
CCGATACCGCCGCGCGAGGCGGCGCCGAGCCACCTGCTCGGGACCTGGAGCCGCGAGAACGAGTGGAAGGAA 
GAACAATTCCTGGAGATCACCCGTTCCGGCAGCAATGTCTACCGCGCGGTCAGCTACGTGGACAGCAAGGAC 
AACACCGAGAGCCTGGAGGACTACGGCTTCACCGTCTCCCACCAGGGCAAGCGCTGGTACCTGTCGGCCGGC 
CTGCCGAAGAGCCTGGGCGGCAACTTCGTCATCGCCGGCTTCGAGATCACCGACGGCGACGAACTGGTGATC 
TACAACCTCGACGTCGAGCGCATCGTCGAGGACCTCGGCGCCGGCCAGCTCGACGGCGAGACCGTCGACAGC 
GAGCAGGGCAAGGGCGCGCTGGTGCGCAGCCCGCTGGCGAAGGTCTTCGACTACCTGAACGATCCCGCCAAC 
TCCGACGTGTTCGTCGAGGCCGCCCGCTTCCAGCGGGTCACCCAATGA