ViewGene
Locus Name:
GeneID:
Location:

GeneID:4051
TrivialName: PA14_30760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30760
PAO1 Ortholog Locus:PA2578
Sequence Length:561
Protein Length:186
Start: 2669335
Stop: 2668775
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05966.1|AE004686_4 (AE004686) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 178/186 (95%), Positives = 181/186 (97%)
Sequence:
ATGCCCACACCCGGCACGGGTTCCGTCCCGGACCTGCAACTCGTCCCGTTCCAGCTGGAACACTTCCCCACC
CTGCAACGCTGGTTCGCCACGGAAAAGGAGCTGGTGCAATGGGCCGGCCCCGCCCTGCGGCATCCGCTGAGC
CTCGAGCAGATGCATGAAGACCTCGCGGAAAGCCGCCGACAACCGCCGCTGCGCCTGCTCTGGAGCGCTTGC
CTGGATGGCCAGGTCATCGGCCATTGCCAGTTGCTGTTCGACCGCCGCAACGGCGTCGTCCGCCTGGCTCGC
ATAGCCCTGGCGCCAAACGCACGCGGCCAGGGCCTGGGGCTACCGATGCTGGAGGCGCTGCTCGCCGAGGCT
TTCGCCGACGCCGACATCGAGCGCGTTGAATTGAACGTGTACGACTGGAACGCTGCCGCCCGTCATCTCTAT
CGACGCGCGGGGTTCCGCGAAGAAGGCTTGCGCCGCTCCGCCACCCGGGTCGGCCGGGAACGCTGGAATGTC
GTTCTCATGGGGCTTTTGCGGCAAGAGTGGGCGGCGGGAGGCGCCGGCAACGACTGA
Translation:
MPTPGTGSVPDLQLVPFQLEHFPTLQRWFATEKELVQWAGPALRHPLSLEQMHEDLAESRRQPPLRLLWSAC
LDGQVIGHCQLLFDRRNGVVRLARIALAPNARGQGLGLPMLEALLAEAFADADIERVELNVYDWNAAARHLY
RRAGFREEGLRRSATRVGRERWNVVLMGLLRQEWAAGGAGND*
AnnotationID:4058GeneID:4051
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA2578
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1670,pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC46875.1| (AL591790) PUTATIVE ACETYLTRANSFERASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 174

 Score =  174 bits (440), Expect = 3e-43
 Identities = 79/171 (46%), Positives = 114/171 (66%), Gaps = 1/171 (0%)








 
Structural Features:
COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins 
[Translation, ribosomal structure and biogenesis]
CD-Length = 187 residues,  93.6% aligned
Score = 80.4 bits (197), Expect = 1e-16
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 6/175 (3%)

pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family.
CD-Length = 82 residues, 100.0% aligned
Score = 62.6 bits (152), Expect = 3e-11
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8104




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25247




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33145




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4051_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4051
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6293
                           PA2578_tr
                           translation of PA2578
                           186
                           95.69
                           97.31
                           0
                           939.0
     

     
     
173303
                           gb|AAG05966.1|AE004686_4
                           (AE004686) probable acetyltransferase [Pseudomonas aeruginosa PAO1]
                           186
                           95.69
                           97.31
                           0
                           939.0
     

     
     
173304
                           emb|CAC46875.1|
                           (AL591790) PUTATIVE ACETYLTRANSFERASE PROTEIN [Sinorhizobium meliloti]
                           187
                           42.24
                           60.96
                           14
                           435.0
     

     






      

          
GC ORFID: 47053How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2578Glimmer Score: 

          
Start: 2284591Stop: 2285151

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2578 translation of PA2578Homolog Bit Score 366.0

          
Other Homologs:  t_PA2578 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCACACCCGGCACGGGTTCCGTCCCGGACCTGCAACTCGTCCCGTTCCAGCTGGAACACTTCCCCACC 
CTGCAACGCTGGTTCGCCACGGAAAAGGAGCTGGTGCAATGGGCCGGCCCCGCCCTGCGGCATCCGCTGAGC 
CTCGAGCAGATGCATGAAGACCTCGCGGAAAGCCGCCGACAACCGCCGCTGCGCCTGCTCTGGAGCGCTTGC 
CTGGATGGCCAGGTCATCGGCCATTGCCAGTTGCTGTTCGACCGCCGCAACGGCGTCGTCCGCCTGGCTCGC 
ATAGCCCTGGCGCCAAACGCACGCGGCCAGGGCCTGGGGCTACCGATGCTGGAGGCGCTGCTCGCCGAGGCT 
TTCGCCGACGCCGACATCGAGCGCGTTGAATTGAACGTGTACGACTGGAACGCTGCCGCCCGTCATCTCTAT 
CGACGCGCGGGGTTCCGCGAAGAAGGCTTGCGCCGCTCCGCCACCCGGGTCGGCCGGGAACGCTGGAATGTC 
GTTCTCATGGGGCTTTTGCGGCAAGAGTGGGCGGCGGGAGGCGCCGGCAACGACTGA