ViewGene
Locus Name:
GeneID:
Location:

GeneID:4050
TrivialName: PA14_49500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49500
PAO1 Ortholog Locus:PA1153
Sequence Length:555
Protein Length:184
Start: 4401791
Stop: 4402345
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04542.1|AE004545_5 (AE004545) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 173/184 (94%), Positives = 173/184 (94%)
Sequence:
ATGTCTGACGCCCCCCTCCACTACAGCCGTTTCACCCACCACCATCGGGTCCTGCGCGCCGTGCTGCTGGAT
GAGGAAGGCTGGTTCGTGCTCTCCGACCTGGCACGGCTGCTGGGCCGTTACCTGGGTGGTCGGGCGCCGGCG
GCGTTGTGTGACGAGGCGCCGTGGCCGCTGGCGACGGCGGAACAGCGCGAGCACTTGTTCGCCCTCTGTCAT
GTGCTGGAGCGGCATCTGGACACCGATCAGTGGCGGCTCGCCTGGCTCCATGACGAACGCCACGGGCCACGC
CAGGACTGCCTGGTCAGCGAGTCCGGGCTCTACGCTCTGCTCTGGCTCGCAGTGCCTGGCGCGGCACGGGGT
TTGCGCCGTTGGGTCAGCGGCTCGGTGCTGCCACGCCTGCGCAGCCAGTCTCACCCCAAAGCCACGCCCCAG
CGCGCCGTGCTGCACTGGAAAACCGCCGAGATCGACACCCTGCACTGGCAAGGCAAGACCTGGATCCCCCTC
TCCGACTGCCCCCAACTCCTCGACCGCCCACGCCCGCTGATCCGGGCCTGA
Translation:
MSDAPLHYSRFTHHHRVLRAVLLDEEGWFVLSDLARLLGRYLGGRAPAALCDEAPWPLATAEQREHLFALCH
VLERHLDTDQWRLAWLHDERHGPRQDCLVSESGLYALLWLAVPGAARGLRRWVSGSVLPRLRSQSHPKATPQ
RAVLHWKTAEIDTLHWQGKTWIPLSDCPQLLDRPRPLIRA*
AnnotationID:4057GeneID:4050
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:45
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1153
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3617
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3617,  Prophage antirepressor [Transcription]
        CD-Length = 176 residues,  81.8% aligned
        Score =  122 bits (308), Expect = 2e-29






   
Genomic Context:






   
Comment:


















    ReferenceID:8102




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25245




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4050
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6292
                           PA1153_tr
                           translation of PA1153
                           184
                           94.02
                           94.02
                           0
                           939.0
     

     
     
173302
                           gb|AAG04542.1|AE004545_5
                           (AE004545) hypothetical protein PA1153 [Pseudomonas aeruginosa PAO1]
                           184
                           94.02
                           94.02
                           0
                           939.0
     

     






      

          
GC ORFID: 47052How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1153Glimmer Score: 

          
Start: 552117Stop: 551563

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1153 translation of PA1153Homolog Bit Score 366.0

          
Other Homologs:  t_PA1153 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTGACGCCCCCCTCCACTACAGCCGTTTCACCCACCACCATCGGGTCCTGCGCGCCGTGCTGCTGGAT 
GAGGAAGGCTGGTTCGTGCTCTCCGACCTGGCACGGCTGCTGGGCCGTTACCTGGGTGGTCGGGCGCCGGCG 
GCGTTGTGTGACGAGGCGCCGTGGCCGCTGGCGACGGCGGAACAGCGCGAGCACTTGTTCGCCCTCTGTCAT 
GTGCTGGAGCGGCATCTGGACACCGATCAGTGGCGGCTCGCCTGGCTCCATGACGAACGCCACGGGCCACGC 
CAGGACTGCCTGGTCAGCGAGTCCGGGCTCTACGCTCTGCTCTGGCTCGCAGTGCCTGGCGCGGCACGGGGT 
TTGCGCCGTTGGGTCAGCGGCTCGGTGCTGCCACGCCTGCGCAGCCAGTCTCACCCCAAAGCCACGCCCCAG 
CGCGCCGTGCTGCACTGGAAAACCGCCGAGATCGACACCCTGCACTGGCAAGGCAAGACCTGGATCCCCCTC 
TCCGACTGCCCCCAACTCCTCGACCGCCCACGCCCGCTGATCCGGGCCTGA