ViewGene

Locus Name:
GeneID:
Location:

GeneID:405
TrivialName: PA14_60580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60580
PAO1 Ortholog Locus:PA4579
Sequence Length:1857
Protein Length:618
Start: 5399180
Stop: 5401036
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07967.1|AE004871_7 (AE004871) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 616/618 (99%), Positives = 616/618 (99%)
Sequence:
ATGCCGAAACGCCTGTTGCCCTGGATGGCGCTGTGCGCCTGCTCCCCCCTTCTGGCTGCGCCCACGGTTCCC
GAGGCCCGCCTCCAGCAACTGGCCGCCGATCCCTACTGGATCGCCCTCGGCCACTACGAACGCGGCAAGCTC
GGCGGTTGGCGCAGCTACGTCGACGACGAGCGGTTCTTCCTCGCCGACAACGGCGAGAGCCACCCGGACGCC
GAACTGGCGGCCACGCTAAAGGCGCTCTATGCCTCGCCCAGCCTTGGCGACAAGCATGCCCAGTGCGTCTAC
CCGGCGCGCACCCGCTGGCTGCGCCAGCAACTGCAACTCGACGACCTCCCGCAGCCGCAGTGCGGCGAATAC
GACAACTGGTACCGCGACATCAACCCGCACAGCGCGGTGCTGGTGTTCCCCGCGGCCTACCTGAACAGCCCG
TCGTCGATGTTCGGCCACACCCTGCTGCGCATCGACCAGGCCGACGTCACCAGCAACAACACTGCCCTGCTC
AGCTACGCGCTGAACTTCGGCGCCTACATCGAAGGCATGGACAACAGCATCCTCTATGCCTGGAAAGGCCTG
ATGGGCGGCTATCCCGGCCTGTTCGCGCTGGTCCCGTACCGGGAGAAGCTGGCCGAATACAGTCGCCTGGAG
AACCGCGACCTCTGGGAATACAAGCTGAACCTCACGCCCGAGGAGACCGGGCGAATGGTCGAACACGTCTGG
GAACTCAAGCAGGTCCGCTTCGACTACTACTTCTTCGACGAGAACTGTTCGTTCCGCCTGCTCGAACTGATG
GAGATCGCCCGCCCGGGCATCGAGCTGACTGAGCAGTTCCCGCTTACCGCGATCCCCACCGACACCGTGCGC
GCGGTGAAGAACGCCGGGCTGATCGAGCGCATCGACTACCGGCCGTCGCGCGAGAAGGAACTGCTCGCCCGC
GCCGAACCGCTCGACCATGCCGAGCGCGACTGGGCCAAGCGCCTGGCGGACGACGACAGCCTGCTCGACGCT
CCCGACTTCAAGGCCCTGCCGATGCCGCGCCAGGCGCTGATCCAGGACGCCGCCTTCCGTCTGGTGCGCTAC
CGCGCCACCGGTCAGGCGCGTGACAGCGGCATCGCCTCGCGCAGCTACAACCTGTTGCGTGCGATCAACCGC
AACCCACCGCCGGACCTCCAGGTCGAGCGCCCCGGCCAGCCGGAAGACGGCCACGAGTCACGGACCTGGCAG
TTCGGCGTCGGCAGCCGCGATGACCGCGCCTTCGCCGAGTACGGCCTGCGCATGGCCTACCATGACCTCGCC
GATAACGCCTATGGCTTCCCCCTCGGCGCGCAGATCGAGATCGGCCAGCTCAAGCTGCGCCAGTACGAAGGC
AACCGCTGGCAGTTGCAGAATCTCGACCTGGTCACCATCCGCTCGCTGACCCCGCGCAACCAGTTGCTCAAG
CCGCTGTCCTGGCAGGTCGCCGGCGGCCTGGAGCGGGTGCCGGGCGAGGACGGCGACGAAAATCTGGTCAGC
CACCTCAACGGCGGCGCCGGCGGCAGCTGGATGTTCGGCGACGACCTGCTGCTCTACGCCATGGGCACCGCG
CGGATCGAGAACAACAGGGACTTCGCCGCCGCCATCGCCCCGGCGGTGGGCTTCGACAGCGGCTTGCTGTGG
CGCAACCCGTTGGGCAACCTGACCCTGGAGGCCAAGGGCGACTACTTCCACAACGGCGAAGTGCGCCGCAGC
CTGGGCTTCGTCCAGCAGGTGGAGCTGGGCCGCGACCTCGGCCTGCGCCTGAGCGCCGAACGCGAGTTCAGC
CATGTCGGCAAGCCGATCAACGAGGTCAAGCTGGAGCTACGCTGGTACTACTACTGA
Translation:
MPKRLLPWMALCACSPLLAAPTVPEARLQQLAADPYWIALGHYERGKLGGWRSYVDDERFFLADNGESHPDA
ELAATLKALYASPSLGDKHAQCVYPARTRWLRQQLQLDDLPQPQCGEYDNWYRDINPHSAVLVFPAAYLNSP
SSMFGHTLLRIDQADVTSNNTALLSYALNFGAYIEGMDNSILYAWKGLMGGYPGLFALVPYREKLAEYSRLE
NRDLWEYKLNLTPEETGRMVEHVWELKQVRFDYYFFDENCSFRLLELMEIARPGIELTEQFPLTAIPTDTVR
AVKNAGLIERIDYRPSREKELLARAEPLDHAERDWAKRLADDDSLLDAPDFKALPMPRQALIQDAAFRLVRY
RATGQARDSGIASRSYNLLRAINRNPPPDLQVERPGQPEDGHESRTWQFGVGSRDDRAFAEYGLRMAYHDLA
DNAYGFPLGAQIEIGQLKLRQYEGNRWQLQNLDLVTIRSLTPRNQLLKPLSWQVAGGLERVPGEDGDENLVS
HLNGGAGGSWMFGDDLLLYAMGTARIENNRDFAAAIAPAVGFDSGLLWRNPLGNLTLEAKGDYFHNGEVRRS
LGFVQQVELGRDLGLRLSAEREFSHVGKPINEVKLELRWYYY*
AnnotationID:414GeneID:405
AnnotatorUID: diggins
Modification Date/Time: 2005-05-05 10:10:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4579
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN48741.1|AE011332_14 (AE011332) putative outermembrane protein [Leptospira interrogans
           serovar lai str. 56601]
          Length = 672

 Score =  279 bits (713), Expect = 4e-74
 Identities = 167/476 (35%), Positives = 259/476 (54%), Gaps = 17/476 (3%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:813
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17955
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:405

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
689 PA4579_tr translation of PA4579 618 99.67 99.67 0 3279.0
31289 gb|AAG07967.1|AE004871_7 (AE004871) hypothetical protein PA4579 [Pseudomonas aeruginosa PAO1] 618 99.67 99.67 0 3279.0
31290 gb|AAN66303.1|AE016259_1 (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440] 621 71.98 83.73 4 2426.0
31291 gb|AAO58033.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 618 69.57 81.87 1 2323.0
GC ORFID: 43407How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4579Glimmer Score:
Start: 4662860Stop: 4664716
Length: 1857
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4579 translation of PA4579Homolog Bit Score 1267.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5636 (ORF: BLASTX 900.0), t_PA4579 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGAAACGCCTGTTGCCCTGGATGGCGCTGTGCGCCTGCTCCCCCCTTCTGGCTGCGCCCACGGTTCCC
GAGGCCCGCCTCCAGCAACTGGCCGCCGATCCCTACTGGATCGCCCTCGGCCACTACGAACGCGGCAAGCTC
GGCGGTTGGCGCAGCTACGTCGACGACGAGCGGTTCTTCCTCGCCGACAACGGCGAGAGCCACCCGGACGCC
GAACTGGCGGCCACGCTAAAGGCGCTCTATGCCTCGCCCAGCCTTGGCGACAAGCATGCCCAGTGCGTCTAC
CCGGCGCGCACCCGCTGGCTGCGCCAGCAACTGCAACTCGACGACCTCCCGCAGCCGCAGTGCGGCGAATAC
GACAACTGGTACCGCGACATCAACCCGCACAGCGCGGTGCTGGTGTTCCCCGCGGCCTACCTGAACAGCCCG
TCGTCGATGTTCGGCCACACCCTGCTGCGCATCGACCAGGCCGACGTCACCAGCAACAACACTGCCCTGCTC
AGCTACGCGCTGAACTTCGGCGCCTACATCGAAGGCATGGACAACAGCATCCTCTATGCCTGGAAAGGCCTG
ATGGGCGGCTATCCCGGCCTGTTCGCGCTGGTCCCGTACCGGGAGAAGCTGGCCGAATACAGTCGCCTGGAG
AACCGCGACCTCTGGGAATACAAGCTGAACCTCACGCCCGAGGAGACCGGGCGAATGGTCGAACACGTCTGG
GAACTCAAGCAGGTCCGCTTCGACTACTACTTCTTCGACGAGAACTGTTCGTTCCGCCTGCTCGAACTGATG
GAGATCGCCCGCCCGGGCATCGAGCTGACTGAGCAGTTCCCGCTTACCGCGATCCCCACCGACACCGTGCGC
GCGGTGAAGAACGCCGGGCTGATCGAGCGCATCGACTACCGGCCGTCGCGCGAGAAGGAACTGCTCGCCCGC
GCCGAACCGCTCGACCATGCCGAGCGCGACTGGGCCAAGCGCCTGGCGGACGACGACAGCCTGCTCGACGCT
CCCGACTTCAAGGCCCTGCCGATGCCGCGCCAGGCGCTGATCCAGGACGCCGCCTTCCGTCTGGTGCGCTAC
CGCGCCACCGGTCAGGCGCGTGACAGCGGCATCGCCTCGCGCAGCTACAACCTGTTGCGTGCGATCAACCGC
AACCCACCGCCGGACCTCCAGGTCGAGCGCCCCGGCCAGCCGGAAGACGGCCACGAGTCACGGACCTGGCAG
TTCGGCGTCGGCAGCCGCGATGACCGCGCCTTCGCCGAGTACGGCCTGCGCATGGCCTACCATGACCTCGCC
GATAACGCCTATGGCTTCCCCCTCGGCGCGCAGATCGAGATCGGCCAGCTCAAGCTGCGCCAGTACGAAGGC
AACCGCTGGCAGTTGCAGAATCTCGACCTGGTCACCATCCGCTCGCTGACCCCGCGCAACCAGTTGCTCAAG
CCGCTGTCCTGGCAGGTCGCCGGCGGCCTGGAGCGGGTGCCGGGCGAGGACGGCGACGAAAATCTGGTCAGC
CACCTCAACGGCGGCGCCGGCGGCAGCTGGATGTTCGGCGACGACCTGCTGCTCTACGCCATGGGCACCGCG
CGGATCGAGAACAACAGGGACTTCGCCGCCGCCATCGCCCCGGCGGTGGGCTTCGACAGCGGCTTGCTGTGG
CGCAACCCGTTGGGCAACCTGACCCTGGAGGCCAAGGGCGACTACTTCCACAACGGCGAAGTGCGCCGCAGC
CTGGGCTTCGTCCAGCAGGTGGAGCTGGGCCGCGACCTCGGCCTGCGCCTGAGCGCCGAACGCGAGTTCAGC
CATGTCGGCAAGCCGATCAACGAGGTCAAGCTGGAGCTACGCTGGTACTACTACTGA