ViewGene
Locus Name:
GeneID:
Location:

GeneID:4049
TrivialName: PA14_06210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06210
PAO1 Ortholog Locus:PA0475
Sequence Length:570
Protein Length:189
Start: 548338
Stop: 548907
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03864.1|AE004485_5 (AE004485) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 189/189 (100%), Positives = 189/189 (100%)
Sequence:
TTGCCGAAGAAGTCCAATGCCGCCGAACGGATCGTCCATGCCACCGCCTCGCTGCTGGCCAGCCGCGGGTAT
TTCGGCACCGGGCTGAGCGACATCATCGCTCGCGCCGAGGCGCCGAAAGGCTCGCTCTATCACTATTTCCCC
GAGGGCAAGCCGCAGATCGCCAGCGCCGCGATCGGCTTCGTCGCCGACGAGGTGGCATCCTTCCTCGACCGC
GCCGGGACCCAGGCCCCCCATGCGCGCAACGTCCTCCGCCAGTTCACCGCGACCCTGCGTGGCTGGCTGGAG
CATTCGCGTTTCGAAGAGGCCTGTCCGGTGCTTTCCACCAGCCTGAGCATCGACGCCGAGCTGGCCCCGGTG
CACGCTGAATGCCGCCGGGCGCTCCGCGCCTGGCACGCCAGCATCGAGCGTGCGTTGCGCGCCGACGGACTG
GCGGAAAAGCTCGCCGCCTCGCGCGCCTGGCTGATCCTCGCGGCGCTGGAGGGGGCGGTCGCGGTGGCCCGC
GTCGAGCGGTCGTTCCAGGCGCTGGATGCGATCGAGGAAGAATTGCAGGCGCTACTGCCGGCCTAG
Translation:
MPKKSNAAERIVHATASLLASRGYFGTGLSDIIARAEAPKGSLYHYFPEGKPQIASAAIGFVADEVASFLDR
AGTQAPHARNVLRQFTATLRGWLEHSRFEEACPVLSTSLSIDAELAPVHAECRRALRAWHASIERALRADGL
AEKLAASRAWLILAALEGAVAVARVERSFQALDAIEEELQALLPA*
AnnotationID:4056GeneID:4049
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 09:09:38
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA0475
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues,  80.9% aligned
Score = 40.7 bits (96), Expect = 1e-04
Identities = 16/38 (42%), Positives = 21/38 (55%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15000




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25243




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33771




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4049_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4049
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6291
                           PA0475_tr
                           translation of PA0475
                           189
                           99.99
                           99.99
                           0
                           942.0
     

     
     
173301
                           gb|AAG03864.1|AE004485_5
                           (AE004485) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           189
                           99.47
                           99.99
                           0
                           940.0
     

     






      

          
GC ORFID: 47051How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0475Glimmer Score: 

          
Start: 6349680Stop: 6350249

          
Length: 570


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0475 translation of PA0475Homolog Bit Score 367.0

          
Other Homologs:  t_PA0475 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCGAAGAAGTCCAATGCCGCCGAACGGATCGTCCATGCCACCGCCTCGCTGCTGGCCAGCCGCGGGTAT 
TTCGGCACCGGGCTGAGCGACATCATCGCTCGCGCCGAGGCGCCGAAAGGCTCGCTCTATCACTATTTCCCC 
GAGGGCAAGCCGCAGATCGCCAGCGCCGCGATCGGCTTCGTCGCCGACGAGGTGGCATCCTTCCTCGACCGC 
GCCGGGACCCAGGCCCCCCATGCGCGCAACGTCCTCCGCCAGTTCACCGCGACCCTGCGTGGCTGGCTGGAG 
CATTCGCGTTTCGAAGAGGCCTGTCCGGTGCTTTCCACCAGCCTGAGCATCGACGCCGAGCTGGCCCCGGTG 
CACGCTGAATGCCGCCGGGCGCTCCGCGCCTGGCACGCCAGCATCGAGCGTGCGTTGCGCGCCGACGGACTG 
GCGGAAAAGCTCGCCGCCTCGCGCGCCTGGCTGATCCTCGCGGCGCTGGAGGGGGCGGTCGCGGTGGCCCGC 
GTCGAGCGGTCGTTCCAGGCGCTGGATGCGATCGAGGAAGAATTGCAGGCGCTACTGCCGGCCTAG