ViewGene
Locus Name:
GeneID:
Location:

GeneID:4048
TrivialName: PA14_57510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57510
PAO1 Ortholog Locus:PA4426
Sequence Length:579
Protein Length:192
Start: 5124074
Stop: 5124652
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07814.1|AE004857_5 (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 192/192 (100%), Positives = 192/192 (100%)
Sequence:
ATGAGCCGTACCGCCTTCGTCGCCGCCACCCTGGCCCTGAGCCTGGCCCTGGGAGGCTGCAGCAGTTTCCTC
AGCGCCACCCGGGACAAACCGATCGACGACGATCGCGGGACCCGAACCATCGGCAGCAAGATCGACGACTCG
CTGATCGAGACCAAGGCCGCGGTGAACATCGCCAAGGCCGATCCAGCCCTGGACAAGGACTCTCACATCGTC
GTGGTCAGCTACAACGGCATCGTGCTGATCGCCGGCCAGACCCCGCGCGCCGACCTCAAGAGCAAGGCCGAG
CAGGCCGCACGCACGGTGCAGAAGGTCAAGAACGTGCATAACGAACTGCAGGTGACCTCGCCCTCCTCCCTG
CTCGCCCGCAACAACGACGCCTGGATCACCACCAAGCTGAAGACCCAGATGCTCAGCGATCCCAACGTGCCC
TCGTCGCGGATCAAGGTGGTCACCGAGAACGGCATCGTCTACATGATGGGCCTGGTCAACCAGCAGGAAGCC
GCCCAGGCTGTCCGCGTCGCCCAGGGCGTCGACGGGGTGCAGAAGATCGTCAAGCTGTTCGAATACATAAAC
TGA
Translation:
MSRTAFVAATLALSLALGGCSSFLSATRDKPIDDDRGTRTIGSKIDDSLIETKAAVNIAKADPALDKDSHIV
VVSYNGIVLIAGQTPRADLKSKAEQAARTVQKVKNVHNELQVTSPSSLLARNNDAWITTKLKTQMLSDPNVP
SSRIKVVTENGIVYMMGLVNQQEAAQAVRVAQGVDGVQKIVKLFEYIN*
AnnotationID:4055GeneID:4048
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:03
Gene Name:
Confidence Code:3
GeneProduct:putative secreted lipoprotein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2823
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66946.1|AE016322_13 (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 192

 Score =  274 bits (700), Expect = 2e-73
 Identities = 142/190 (74%), Positives = 161/190 (84%), Gaps = 2/190 (1%)

>gb|AAO57871.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 192

 Score =  260 bits (665), Expect = 3e-69
 Identities = 131/182 (71%), Positives = 157/182 (86%)







 
Structural Features:
COG2823, OsmY, Predicted periplasmic or secreted lipoprotein 
CD-Length = 196 residues,  98.5% aligned
Score =  163 bits (415), Expect = 2e-41
Identities = 85/194 (43%), Positives = 114/194 (58%), Gaps = 3/194 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:8098




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31466




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4048_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4048
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6290
                           PA4426_tr
                           translation of PA4426
                           192
                           99.99
                           99.99
                           0
                           943.0
     

     
     
173297
                           gb|AAG07814.1|AE004857_5
                           (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           192
                           99.99
                           99.99
                           0
                           943.0
     

     
     
173298
                           gb|AAN66946.1|AE016322_13
                           (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
                           194
                           73.19
                           82.98
                           4
                           699.0
     

     
     
173299
                           gb|AAO57871.1|
                           (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           194
                           68.55
                           82.98
                           4
                           665.0
     

     
     
173300
                           gb|AAO91238.1|
                           (AE016965) conserved hypothetical protein [Coxiella burnetii RSA 493]
                           209
                           35.40
                           51.67
                           35
                           309.0
     

     






      

          
GC ORFID: 47050How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4426Glimmer Score: 

          
Start: 4387753Stop: 4388331

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4426 translation of PA4426Homolog Bit Score 367.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2011 (ORF: BLASTX 262.0), t_PA4426 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCGTACCGCCTTCGTCGCCGCCACCCTGGCCCTGAGCCTGGCCCTGGGAGGCTGCAGCAGTTTCCTC 
AGCGCCACCCGGGACAAACCGATCGACGACGATCGCGGGACCCGAACCATCGGCAGCAAGATCGACGACTCG 
CTGATCGAGACCAAGGCCGCGGTGAACATCGCCAAGGCCGATCCAGCCCTGGACAAGGACTCTCACATCGTC 
GTGGTCAGCTACAACGGCATCGTGCTGATCGCCGGCCAGACCCCGCGCGCCGACCTCAAGAGCAAGGCCGAG 
CAGGCCGCACGCACGGTGCAGAAGGTCAAGAACGTGCATAACGAACTGCAGGTGACCTCGCCCTCCTCCCTG 
CTCGCCCGCAACAACGACGCCTGGATCACCACCAAGCTGAAGACCCAGATGCTCAGCGATCCCAACGTGCCC 
TCGTCGCGGATCAAGGTGGTCACCGAGAACGGCATCGTCTACATGATGGGCCTGGTCAACCAGCAGGAAGCC 
GCCCAGGCTGTCCGCGTCGCCCAGGGCGTCGACGGGGTGCAGAAGATCGTCAAGCTGTTCGAATACATAAAC 
TGA