ViewGene
Locus Name:
GeneID:
Location:

GeneID:4046
TrivialName: PA14_41490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41490
PAO1 Ortholog Locus:PA1785
Sequence Length:579
Protein Length:192
Start: 3701042
Stop: 3701620
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05174.1|AE004604_4 (AE004604) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 191/192 (99%), Positives = 192/192 (100%)
Sequence:
ATGCTGCGTATCCTGCTGATCGACGACACGCCGAAGAAAGTCGGACGCCTCAGGGCCGCCCTGCTCGAGAGC
GGTTTCGAAGTGGTGGACGAGTCGGGGCTGACCATCGACCTGCCGGCGCGCGTCGAAGCGCTGCGTCCCGAC
GTGATCCTGATCGACACGGAGTCTCCCGGCCGCGACGTGATGGAGCAGGTCTGCCTGGTCAGCCGCGACCAG
CCGCGCCCGATCGTGATGTTCACCGACGAGCACGATCCGGGAGTGATGCGCCGCGCCATCCAGTCCGGGGTC
AGCGCCTACATCGTCGAAGGCATCCAGGCCAGCCGCCTGCAACCGATCCTCGACGTGGCCATGGCGCGCTTC
GAGAGCGACCAGGCGCTGCGCGCTCAACTGCAGGCGCGCGAGGCGCAGCTGGCCGAGCGCAAGCGCATCGAG
CTGGCCAAGGGCCTGCTGATGAAGATGAAGCATTGCGGCGAGGAGGAAGCCTACACGCTGATGCGACGCCAG
GCCATGAGCCGCCAGCAGAAGCTGATCCAGGTCGCCGAGCAGATCATCGCCATGCACGACATGCTCGGCGGC
TGA
Translation:
MLRILLIDDTPKKVGRLRAALLESGFEVVDESGLTIDLPARVEALRPDVILIDTESPGRDVMEQVCLVSRDQ
PRPIVMFTDEHDPGVMRRAIQSGVSAYIVEGIQASRLQPILDVAMARFESDQALRAQLQAREAQLAERKRIE
LAKGLLMKMKHCGEEEAYTLMRRQAMSRQQKLIQVAEQIIAMHDMLGG*
AnnotationID:4053GeneID:4046
AnnotatorUID: diggins
Modification Date/Time: 2005-05-11 07:07:14
Gene Name:nasT
Confidence Code:2
GeneProduct:response regulator NasT
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3707
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAA58582.1| (X83602) NAST [Azotobacter vinelandii]
          Length = 192

 Score =  338 bits (868), Expect = 8e-93
 Identities = 174/191 (91%), Positives = 186/191 (97%)

>gb|AAO55820.1| (AE016864) response regulator NasT [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 191

 Score =  327 bits (837), Expect = 3e-89
 Identities = 170/191 (89%), Positives = 181/191 (94%)

>gb|AAN67707.1|AE016401_10 (AE016781) response regulator NasT [Pseudomonas putida KT2440]
          Length = 191

 Score =  308 bits (788), Expect = 2e-83
 Identities = 158/191 (82%), Positives = 175/191 (91%)








 
Structural Features:
COG3707, AmiR, Response regulator with putative antiterminator output domain 
[Signal transduction mechanisms]
CD-Length = 194 residues,  97.9% aligned
Score =  196 bits (500), Expect = 1e-51
Identities = 85/190 (44%), Positives = 123/190 (64%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8094




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25237




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37142




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4046_cdd.html


    		




 
URL:

















    ReferenceID:38133




  
Author/Investigator(s):
        Gutierrez JC, Ramos F, Ortner L, Tortolero M.





  
Title:
        nasST, two genes involved in the induction of the assimilatory nitrite-nitrate reductase operon (nasAB) of Azotobacter vinelandii.




  
PubMed:
        8748040


MedLine:
        




    
Source:
Mol Microbiol. 1995 Nov;18(3):579-91.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=96342386&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4046
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6287
                           PA1785_tr
                           translation of PA1785
                           192
                           99.47
                           99.99
                           0
                           943.0
     

     
     
173187
                           gb|AAG05174.1|AE004604_4
                           (AE004604) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           192
                           99.47
                           99.99
                           0
                           943.0
     

     
     
173188
                           emb|CAA58582.1|
                           (X83602) NAST [Azotobacter vinelandii]
                           192
                           90.62
                           96.87
                           0
                           868.0
     

     
     
173189
                           gb|AAO55820.1|
                           (AE016864) response regulator NasT [Pseudomonas syringae pv. tomato str. DC3000]
                           192
                           88.54
                           94.27
                           1
                           837.0
     

     
     
173190
                           gb|AAN67707.1|AE016401_10
                           (AE016781) response regulator NasT [Pseudomonas putida KT2440]
                           192
                           82.29
                           91.14
                           1
                           788.0
     

     






      

          
GC ORFID: 47048How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1785Glimmer Score: 

          
Start: 1252867Stop: 1252289

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1785 translation of PA1785Homolog Bit Score 367.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene363 (ORF: BLASTX 327.0), t_PA1785 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGTATCCTGCTGATCGACGACACGCCGAAGAAAGTCGGACGCCTCAGGGCCGCCCTGCTCGAGAGC 
GGTTTCGAAGTGGTGGACGAGTCGGGGCTGACCATCGACCTGCCGGCGCGCGTCGAAGCGCTGCGTCCCGAC 
GTGATCCTGATCGACACGGAGTCTCCCGGCCGCGACGTGATGGAGCAGGTCTGCCTGGTCAGCCGCGACCAG 
CCGCGCCCGATCGTGATGTTCACCGACGAGCACGATCCGGGAGTGATGCGCCGCGCCATCCAGTCCGGGGTC 
AGCGCCTACATCGTCGAAGGCATCCAGGCCAGCCGCCTGCAACCGATCCTCGACGTGGCCATGGCGCGCTTC 
GAGAGCGACCAGGCGCTGCGCGCTCAACTGCAGGCGCGCGAGGCGCAGCTGGCCGAGCGCAAGCGCATCGAG 
CTGGCCAAGGGCCTGCTGATGAAGATGAAGCATTGCGGCGAGGAGGAAGCCTACACGCTGATGCGACGCCAG 
GCCATGAGCCGCCAGCAGAAGCTGATCCAGGTCGCCGAGCAGATCATCGCCATGCACGACATGCTCGGCGGC 
TGA