ViewGene
Locus Name:
GeneID:
Location:

GeneID:4045
TrivialName: PA14_55590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55590
PAO1 Ortholog Locus:PA0671
Sequence Length:552
Protein Length:183
Start: 4946628
Stop: 4947179
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04060.1|AE004502_3 (AE004502) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 181/183 (98%), Positives = 181/183 (98%)
Sequence:
GTGCCGGCCGGCGCTTCCCTGCCCACCGGGCATGCGCGCCTGGACGCACTGCTACCCGGCGGCGGTTGGCCG
GAGCATGCCCTGAGCGAAATCCTCCATGCCCGCGACGGTGTCGGCGAACTGCAACTACTGATGCCGACCCTC
GCTCGCCTGACCCAGGCGCAACGTCGCGTCGTACTGGTCGGCGCACCCTACGTACCCTATCCGCAGGCCTGG
CTGGCCGCCGCGGTCGACCTGCGCCACCTGGTCCTCTTGCAGGCCAGCGGACGCGACGCCTTGTGGGCTGCC
GAACAGTGCCTGCGCTCGGGCAGTTGCGCCGCTGTGCTGTGCTGGCCGCAGCAGGCCGACGACCGCGCCCTG
CGCCGCCTCCAGGTCGCCGCCGAAAGCGGCCAGGCCCTGGGTTTCGCCTATCGTCCCCTGCGCGAAGCGGTC
AACCCTTCGCCGGCAGCGCTACGCCTGTGCATCGAAACCCGCCCCCCACGCCTGCGCATCCTCAAGTGCCGG
GGCGGCCTCGCGCCGGCGACCGCCCTGCCAGCCAGCGCCTGGCAATGA
Translation:
MPAGASLPTGHARLDALLPGGGWPEHALSEILHARDGVGELQLLMPTLARLTQAQRRVVLVGAPYVPYPQAW
LAAAVDLRHLVLLQASGRDALWAAEQCLRSGSCAAVLCWPQQADDRALRRLQVAAESGQALGFAYRPLREAV
NPSPAALRLCIETRPPRLRILKCRGGLAPATALPASAWQ*
AnnotationID:4052GeneID:4045
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 13:01:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0671
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14998




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25235




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4045
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6286
                           PA0671_tr
                           translation of PA0671
                           183
                           98.90
                           98.90
                           0
                           942.0
     

     
     
173179
                           gb|AAG04060.1|AE004502_3
                           (AE004502) hypothetical protein PA0671 [Pseudomonas aeruginosa PAO1]
                           183
                           98.36
                           98.90
                           0
                           939.0
     

     
     
173180
                           gb|AAO56293.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           56.73
                           67.30
                           27
                           615.0
     

     
     
173181
                           gb|AAN68725.1|AE016504_8
                           (AE016785) cell division inhibitor SulA, putative [Pseudomonas putida KT2440]
                           207
                           56.03
                           64.73
                           25
                           578.0
     

     
     
173182
                           gb|AAM40398.1|
                           (AE012208) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           204
                           51.96
                           59.80
                           25
                           499.0
     

     






      

          
GC ORFID: 47047How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0671Glimmer Score: 

          
Start: 7279Stop: 6728

          
Length: 552


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0671 translation of PA0671Homolog Bit Score 367.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7445 (ORF: BLASTX 265.0), t_PA0671 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGGCCGGCGCTTCCCTGCCCACCGGGCATGCGCGCCTGGACGCACTGCTACCCGGCGGCGGTTGGCCG 
GAGCATGCCCTGAGCGAAATCCTCCATGCCCGCGACGGTGTCGGCGAACTGCAACTACTGATGCCGACCCTC 
GCTCGCCTGACCCAGGCGCAACGTCGCGTCGTACTGGTCGGCGCACCCTACGTACCCTATCCGCAGGCCTGG 
CTGGCCGCCGCGGTCGACCTGCGCCACCTGGTCCTCTTGCAGGCCAGCGGACGCGACGCCTTGTGGGCTGCC 
GAACAGTGCCTGCGCTCGGGCAGTTGCGCCGCTGTGCTGTGCTGGCCGCAGCAGGCCGACGACCGCGCCCTG 
CGCCGCCTCCAGGTCGCCGCCGAAAGCGGCCAGGCCCTGGGTTTCGCCTATCGTCCCCTGCGCGAAGCGGTC 
AACCCTTCGCCGGCAGCGCTACGCCTGTGCATCGAAACCCGCCCCCCACGCCTGCGCATCCTCAAGTGCCGG 
GGCGGCCTCGCGCCGGCGACCGCCCTGCCAGCCAGCGCCTGGCAATGA