ViewGene

Locus Name:
GeneID:
Location:

GeneID:4044
TrivialName: PA14_71250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71250
PAO1 Ortholog Locus:PA5397
Sequence Length:531
Protein Length:176
Start: 6348251
Stop: 6348781
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08782.1|AE004952_4 (AE004952) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 176/176 (100%), Positives = 176/176 (100%)
Sequence:
ATGGCCAAACATGCCCCCCAACTGCCCATCGAGGTCGACAGCGAGACCGGCGTCTGGACCACTGACGCCCTG
CCGATGCTCTACGTACCGCGACATTTCTTCGTCAACAACCACATGGGCATCGAGGAAGTGCTGGGCGCCGAC
GCCTACGCCGAGATCCTCTACAAGGCCGGCTACAAGTCCGCCTGGCACTGGTGCGAGAAGGAAGCCGAATGT
CACGGCCTGGAGGGCGTGGCGGTGTTCGAGCACTACATGAAGCGCCTGTCCCAGCGCGGCTGGGGCCTGTTC
GAGATCGAGCGGATCAACCTCGAGGAAGGCACCGCCGAGGTCCGCCTGCGGCACTCCGCCTTCGTCTACGTC
TACGGCAAGGTCAATCGCAAGGTCGACTACATGTTCACCGGCTGGTTCGCCGGCGCCATGGACCAGATCCTC
GCCGCCCGCGGCAGCAGCCTGCGCACCGTGGCCGAACAGGTCTACAGCGGCGCCGAGGACGGTCACGAAGAC
GGCCTGTTCGTCGTCAAACCCCTGTAA
Translation:
MAKHAPQLPIEVDSETGVWTTDALPMLYVPRHFFVNNHMGIEEVLGADAYAEILYKAGYKSAWHWCEKEAEC
HGLEGVAVFEHYMKRLSQRGWGLFEIERINLEEGTAEVRLRHSAFVYVYGKVNRKVDYMFTGWFAGAMDQIL
AARGSSLRTVAEQVYSGAEDGHEDGLFVVKPL*
AnnotationID:4051GeneID:4044
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5397
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:8090
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25233
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4044

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6285 PA5397_tr translation of PA5397 176 99.99 99.99 0 944.0
173175 gb|AAG08782.1|AE004952_4 (AE004952) hypothetical protein PA5397 [Pseudomonas aeruginosa PAO1] 176 99.99 99.99 0 944.0
173176 gb|AAN65940.1|AE016222_2 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 176 89.20 94.88 0 860.0
173177 gb|AAO53939.1| (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 176 86.93 94.88 0 847.0
173178 emb|CAD17208.1| (AL646076) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 181 57.45 67.40 9 534.0
GC ORFID: 47046How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5397Glimmer Score:
Start: 5611940Stop: 5612470
Length: 531
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5397 translation of PA5397Homolog Bit Score 368.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6580 (ORF: BLASTX 330.0), t_PA5397 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAAACATGCCCCCCAACTGCCCATCGAGGTCGACAGCGAGACCGGCGTCTGGACCACTGACGCCCTG
CCGATGCTCTACGTACCGCGACATTTCTTCGTCAACAACCACATGGGCATCGAGGAAGTGCTGGGCGCCGAC
GCCTACGCCGAGATCCTCTACAAGGCCGGCTACAAGTCCGCCTGGCACTGGTGCGAGAAGGAAGCCGAATGT
CACGGCCTGGAGGGCGTGGCGGTGTTCGAGCACTACATGAAGCGCCTGTCCCAGCGCGGCTGGGGCCTGTTC
GAGATCGAGCGGATCAACCTCGAGGAAGGCACCGCCGAGGTCCGCCTGCGGCACTCCGCCTTCGTCTACGTC
TACGGCAAGGTCAATCGCAAGGTCGACTACATGTTCACCGGCTGGTTCGCCGGCGCCATGGACCAGATCCTC
GCCGCCCGCGGCAGCAGCCTGCGCACCGTGGCCGAACAGGTCTACAGCGGCGCCGAGGACGGTCACGAAGAC
GGCCTGTTCGTCGTCAAACCCCTGTAA