ViewGene
Locus Name:
GeneID:
Location:

GeneID:4043
TrivialName: PA14_23770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23770
PAO1 Ortholog Locus:PA3119
Sequence Length:564
Protein Length:187
Start: 2065916
Stop: 2066479
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06507.1|AE004736_4 (AE004736) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 187/187 (100%), Positives = 187/187 (100%)
Sequence:
GTGGTGGCCTACGATCTTTCCGCCGAGATGCTCGCCGTGGTGGCGCAGAGCGCCGCGGAACGGGGCATGGCG
AACATCCGCACCGAGCAGGGCAAGGCGGAGAGCCTGCCCTTCGCCGACGGCGAGTTCGATTTCGTCTTCAGT
CGCTATTCCACCCATCACTGGCGCGACGTCGGCCTGGCCCTGCGCGAGGTGCGACGGGTGCTCAAGCCCGGC
GGGGTGGCGATCTTCGTCGACGTGGCGGCGCCCGGGCAGGCCTTGCCGGACACCTTCCTGCAGACCGTCGAG
CTGCTCCGCGACACCAGCCATGTGCGCAACTACTCGCCGGCCGAGTGGGCGCGCCTGAGCGGCGAGGCGGGG
TTGCTGGTCACCGGAAGCCGGCGCCAGCGTCTGCGCTTGGAGTTCCAGTCGTGGGTCGAGCGGATGCGTACG
CCGGAGGTGTTCCGCCAGGCGATCCGCAGCCTGCAGCTGGCGGTGGGCGAGGAAGTCAGAGAGTATTTCGAG
ATTGCCGACGACGGCTCGTTCAGCACCGACGTGCTGGTGCTGTGGCTGCGTCGGGAGTGA
Translation:
MVAYDLSAEMLAVVAQSAAERGMANIRTEQGKAESLPFADGEFDFVFSRYSTHHWRDVGLALREVRRVLKPG
GVAIFVDVAAPGQALPDTFLQTVELLRDTSHVRNYSPAEWARLSGEAGLLVTGSRRQRLRLEFQSWVERMRT
PEVFRQAIRSLQLAVGEEVREYFEIADDGSFSTDVLVLWLRRE*
AnnotationID:4050GeneID:4043
AnnotatorUID: diggins
Modification Date/Time: 2004-05-31 19:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative biotin synthesis protein
Cell Localization:()
Synonyms:yafE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative methyltransferase in menaquinone
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67602.1|AE016390_1 (AE016781) methlytransferase, UbiE/COQ5 family [Pseudomonas putida
           KT2440]
          Length = 254

 Score =  264 bits (675), Expect = 2e-70
 Identities = 133/186 (71%), Positives = 149/186 (80%)

>gb|AAM42599.1| (AE012450) methyltransferase in menaquinone/biotin biosynthesis
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
          Length = 249

 Score =  233 bits (595), Expect = 3e-61
 Identities = 116/186 (62%), Positives = 142/186 (76%)

>gb|AAP15738.1| (AE016978) putative biotin synthesis protein [Shigella flexneri 2a
           str. 2457T]
          Length = 206

 Score =  213 bits (542), Expect = 5e-55
 Identities = 108/182 (59%), Positives = 129/182 (70%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14996




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32406




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4043_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4043
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6284
                           PA3119_tr
                           translation of PA3119
                           187
                           99.99
                           99.99
                           0
                           945.0
     

     
     
173154
                           gb|AAG06507.1|AE004736_4
                           (AE004736) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           187
                           99.46
                           99.99
                           0
                           942.0
     

     
     
173155
                           gb|AAC23937.1|
                           (U93274) YafE [Pseudomonas aeruginosa]
                           187
                           99.46
                           99.99
                           0
                           942.0
     

     
     
173160
                           gb|AAP15738.1|
                           (AE016978) putative biotin synthesis protein [Shigella flexneri 2a str. 2457T]
                           206
                           52.91
                           63.10
                           19
                           542.0
     

     
     
173156
                           gb|AAN67602.1|AE016390_1
                           (AE016781) methlytransferase, UbiE/COQ5 family [Pseudomonas putida KT2440]
                           255
                           52.54
                           58.43
                           69
                           678.0
     

     






      

          
GC ORFID: 47045How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3119Glimmer Score: 

          
Start: 2888015Stop: 2887452

          
Length: 564


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3119 translation of PA3119Homolog Bit Score 368.0

          
Other Homologs:  t_PA3119 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTGGCCTACGATCTTTCCGCCGAGATGCTCGCCGTGGTGGCGCAGAGCGCCGCGGAACGGGGCATGGCG 
AACATCCGCACCGAGCAGGGCAAGGCGGAGAGCCTGCCCTTCGCCGACGGCGAGTTCGATTTCGTCTTCAGT 
CGCTATTCCACCCATCACTGGCGCGACGTCGGCCTGGCCCTGCGCGAGGTGCGACGGGTGCTCAAGCCCGGC 
GGGGTGGCGATCTTCGTCGACGTGGCGGCGCCCGGGCAGGCCTTGCCGGACACCTTCCTGCAGACCGTCGAG 
CTGCTCCGCGACACCAGCCATGTGCGCAACTACTCGCCGGCCGAGTGGGCGCGCCTGAGCGGCGAGGCGGGG 
TTGCTGGTCACCGGAAGCCGGCGCCAGCGTCTGCGCTTGGAGTTCCAGTCGTGGGTCGAGCGGATGCGTACG 
CCGGAGGTGTTCCGCCAGGCGATCCGCAGCCTGCAGCTGGCGGTGGGCGAGGAAGTCAGAGAGTATTTCGAG 
ATTGCCGACGACGGCTCGTTCAGCACCGACGTGCTGGTGCTGTGGCTGCGTCGGGAGTGA