ViewGene
Locus Name:
GeneID:
Location:

GeneID:4042
TrivialName: PA14_52070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52070
PAO1 Ortholog Locus:PA0942
Sequence Length:561
Protein Length:186
Start: 4620785
Stop: 4620225
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04331.1|AE004528_9 (AE004528) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 184/186 (98%), Positives = 184/186 (98%)
Sequence:
ATGTCCGCCATCGCCCTTTACGATTACCTGGAAAGGCTGACCAGCCTGATGCGTGCCTGGTCCCGCGAGCAG
CCGCTGGTGGCTGAGCTGCAGCCGGTGCAGTTGAGTGCCTTGCATTACCTGGCGCGTTGTAATCGCTATTCG
GATACTCCGCTGGGCGTGACCGAATACCTCGGCTTGACCAAGGGCACAGTGTCGCAATCGCTCAAGGTGCTG
GAAGGGCGGGGGCTGATCAGCAAGCTGCCGGATGCGCGGGATCGGCGCAGCGTTCATCTGCGGCTGACCGAT
GCGGGGCGCGCGCTGATCGAGGCGGTGATTCCGCCGCAGTTCCTCGAGCAGGCCGTCACGGCACTGGGCGAG
AAGGGCGAACACTTGCAAGGCTTGTTGCGTGATCTTCTGGTCGTCATCCAGCGTCAGGAGGATGTGCCTGGT
TTCGGCCTTTGTCGGTCCTGCCGGTTCCATCAACGGCGTGCGGGTTCGCCCTTCTGCGGTCTAACCGGGGAG
CCGTTGAGCGCTGTCGATGCCGAGCTGATCTGCCGCGAGCACCAGGCCTGCGGCTGA
Translation:
MSAIALYDYLERLTSLMRAWSREQPLVAELQPVQLSALHYLARCNRYSDTPLGVTEYLGLTKGTVSQSLKVL
EGRGLISKLPDARDRRSVHLRLTDAGRALIEAVIPPQFLEQAVTALGEKGEHLQGLLRDLLVVIQRQEDVPG
FGLCRSCRFHQRRAGSPFCGLTGEPLSAVDAELICREHQACG*
AnnotationID:4049GeneID:4042
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 13:01:23
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0942
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1846
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1846, MarR, Transcriptional regulators [Transcription]
     CD-Length = 126 residues,  94.4% aligned
     Score = 58.0 bits (139), Expect = 6e-10






   
Genomic Context:






   
Comment:


















    ReferenceID:8086




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25229




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4042
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6283
                           PA0942_tr
                           translation of PA0942
                           186
                           98.92
                           98.92
                           0
                           945.0
     

     
     
173153
                           gb|AAG04331.1|AE004528_9
                           (AE004528) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           186
                           98.92
                           98.92
                           0
                           945.0
     

     






      

          
GC ORFID: 47044How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0942Glimmer Score: 

          
Start: 333122Stop: 333682

          
Length: 561


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0942 translation of PA0942Homolog Bit Score 368.0

          
Other Homologs:  t_PA0942 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCATCGCCCTTTACGATTACCTGGAAAGGCTGACCAGCCTGATGCGTGCCTGGTCCCGCGAGCAG 
CCGCTGGTGGCTGAGCTGCAGCCGGTGCAGTTGAGTGCCTTGCATTACCTGGCGCGTTGTAATCGCTATTCG 
GATACTCCGCTGGGCGTGACCGAATACCTCGGCTTGACCAAGGGCACAGTGTCGCAATCGCTCAAGGTGCTG 
GAAGGGCGGGGGCTGATCAGCAAGCTGCCGGATGCGCGGGATCGGCGCAGCGTTCATCTGCGGCTGACCGAT 
GCGGGGCGCGCGCTGATCGAGGCGGTGATTCCGCCGCAGTTCCTCGAGCAGGCCGTCACGGCACTGGGCGAG 
AAGGGCGAACACTTGCAAGGCTTGTTGCGTGATCTTCTGGTCGTCATCCAGCGTCAGGAGGATGTGCCTGGT 
TTCGGCCTTTGTCGGTCCTGCCGGTTCCATCAACGGCGTGCGGGTTCGCCCTTCTGCGGTCTAACCGGGGAG 
CCGTTGAGCGCTGTCGATGCCGAGCTGATCTGCCGCGAGCACCAGGCCTGCGGCTGA