ViewGene
Locus Name:
GeneID:
Location:

GeneID:4041
TrivialName: PA14_06010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06010
PAO1 Ortholog Locus:PA0460
Sequence Length:579
Protein Length:192
Start: 533749
Stop: 534327
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03849.1|AE004484_1 (AE004484) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 192/192 (100%), Positives = 192/192 (100%)
Sequence:
ATGCGCGTCACCACCCACGCTACCCTGGCCGCGGCCCTGCTGCTCAGCGCCGCCTCCGCGTTCGCCTTCAAT
CTCGGGGATGCCGCCAAGGCGGTCGCCGGGGCGTCCCAGGGCGACTCCGCCCAGGTAGCCACTACCCCGCAG
ACCAGCGGTCTGCTCGGCGCACTCACCGGCCAGCTCGGGGTCAGCCAGGAGCAGGCGGTCGGCGGTACCGGC
GCCCTGCTCGGCCTGGCCAAGAACCAGTTGGCCGGCAACGATTATTCGCAACTGGTGAAGACCATCCCCGGC
CTCGACAAGCTGGCCGGCAACAACGCCCTGGCCGGTCTCGGCGGGCTCGGCAACGTGCTCGGCAAGAGCGGC
GGCGACAGCAAGGGCCTCGGTTCGCTGCTCGGCAATGCGGACAGCATGGGCGACGTGAACAAGGCCTTCGGC
ACCCTGGGCATGGATAGCGGGATGACCGAGAAGTTCGCCCAGGTGCTGGTCGACTACTTCGGCAAGCAGGGC
GCCAACAGCGAGCTGCTGGGCAGCCTGAGCAATCTCTGGGGAGTGAGCAAGGCGGGCGGCTCGTCGCTGCTC
TGA
Translation:
MRVTTHATLAAALLLSAASAFAFNLGDAAKAVAGASQGDSAQVATTPQTSGLLGALTGQLGVSQEQAVGGTG
ALLGLAKNQLAGNDYSQLVKTIPGLDKLAGNNALAGLGGLGNVLGKSGGDSKGLGSLLGNADSMGDVNKAFG
TLGMDSGMTEKFAQVLVDYFGKQGANSELLGSLSNLWGVSKAGGSSLL*
AnnotationID:4048GeneID:4041
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0460
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:8084




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4041
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6282
                           PA0460_tr
                           translation of PA0460
                           192
                           99.99
                           99.99
                           0
                           946.0
     

     
     
173150
                           gb|AAG03849.1|AE004484_1
                           (AE004484) hypothetical protein PA0460 [Pseudomonas aeruginosa PAO1]
                           192
                           99.99
                           99.99
                           0
                           946.0
     

     
     
173151
                           gb|AAO53997.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           247
                           38.05
                           49.79
                           63
                           445.0
     

     
     
173152
                           gb|AAN65961.1|AE016224_5
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           268
                           30.97
                           42.91
                           80
                           368.0
     

     






      

          
GC ORFID: 47043How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0460Glimmer Score: 

          
Start: 6335091Stop: 6335669

          
Length: 579


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0460 translation of PA0460Homolog Bit Score 369.0

          
Other Homologs:  t_PA0460 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGTCACCACCCACGCTACCCTGGCCGCGGCCCTGCTGCTCAGCGCCGCCTCCGCGTTCGCCTTCAAT 
CTCGGGGATGCCGCCAAGGCGGTCGCCGGGGCGTCCCAGGGCGACTCCGCCCAGGTAGCCACTACCCCGCAG 
ACCAGCGGTCTGCTCGGCGCACTCACCGGCCAGCTCGGGGTCAGCCAGGAGCAGGCGGTCGGCGGTACCGGC 
GCCCTGCTCGGCCTGGCCAAGAACCAGTTGGCCGGCAACGATTATTCGCAACTGGTGAAGACCATCCCCGGC 
CTCGACAAGCTGGCCGGCAACAACGCCCTGGCCGGTCTCGGCGGGCTCGGCAACGTGCTCGGCAAGAGCGGC 
GGCGACAGCAAGGGCCTCGGTTCGCTGCTCGGCAATGCGGACAGCATGGGCGACGTGAACAAGGCCTTCGGC 
ACCCTGGGCATGGATAGCGGGATGACCGAGAAGTTCGCCCAGGTGCTGGTCGACTACTTCGGCAAGCAGGGC 
GCCAACAGCGAGCTGCTGGGCAGCCTGAGCAATCTCTGGGGAGTGAGCAAGGCGGGCGGCTCGTCGCTGCTC 
TGA