ViewGene
Locus Name:
GeneID:
Location:

GeneID:4040
TrivialName: PA14_05600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05600
PAO1 Ortholog Locus:PA0431
Sequence Length:555
Protein Length:184
Start: 497416
Stop: 496862
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03820.1|AE004480_4 (AE004480) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 182/184 (98%), Positives = 183/184 (99%)
Sequence:
ATGAGCGCTCCCACGATGTCCACGCACCTCGCCGATCGCTACAACCAGGCCTGGCTGTTCGCCGCCCGCGCC
CACCGCAACCAGACCCTCAGCGGCTCGCCGCTGCCTTATCTGGTGCACCTGGGCATGGTCGCCAACGAGCTG
CTGGCCGCCGATCGCGACGGTGCCATCGAACGGCTCGGGGAAACCCTGCAGATCGCGGTCCTGCACGACACC
CTGGAAGACACGGCGACCTCACCCGAGGAGCTGCGGCAACAGTTCGGCGAGTTCGTCTGTGCCGGCGTGCAG
GCCCTGAGCAAGCGCGTGGGCGACGGCCCCAAGCGTTCCCTCGACGACTATCTCCAGGCGCTTGCCGAGGGC
CCGGCGCAGTACGCCCTGGTCAAGCTGTGCGACCGCATCACCAACCTGCAGCCACCGCCGCAGACCTGGAGC
CAGGACAAGATCGCGAACTACCACCAGGAGTCGCAGCTGATCCTCGCTCGCCTCGGCCATGCCCACGCCGCG
ACGGCCCGACGCCTGCGGGAAAAAATCGAGCACTACCGCCAGTACTACTGA
Translation:
MSAPTMSTHLADRYNQAWLFAARAHRNQTLSGSPLPYLVHLGMVANELLAADRDGAIERLGETLQIAVLHDT
LEDTATSPEELRQQFGEFVCAGVQALSKRVGDGPKRSLDDYLQALAEGPAQYALVKLCDRITNLQPPPQTWS
QDKIANYHQESQLILARLGHAHAATARRLREKIEHYRQYY*
AnnotationID:4047GeneID:4040
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 09:09:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0431
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:8082




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33687




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4040_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4040
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6281
                           PA0431_tr
                           translation of PA0431
                           184
                           98.91
                           99.45
                           0
                           948.0
     

     
     
173148
                           gb|AAG03820.1|AE004480_4
                           (AE004480) hypothetical protein PA0431 [Pseudomonas aeruginosa PAO1]
                           184
                           98.91
                           99.45
                           0
                           948.0
     

     
     
173149
                           emb|CAD16914.1|
                           (AL646075) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           193
                           41.45
                           53.36
                           14
                           352.0
     

     






      

          
GC ORFID: 47042How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0431Glimmer Score: 

          
Start: 6298758Stop: 6298204

          
Length: 555


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0431 translation of PA0431Homolog Bit Score 369.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2415 (ORF: BLASTX 137.0), t_PA0431 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTCCCACGATGTCCACGCACCTCGCCGATCGCTACAACCAGGCCTGGCTGTTCGCCGCCCGCGCC 
CACCGCAACCAGACCCTCAGCGGCTCGCCGCTGCCTTATCTGGTGCACCTGGGCATGGTCGCCAACGAGCTG 
CTGGCCGCCGATCGCGACGGTGCCATCGAACGGCTCGGGGAAACCCTGCAGATCGCGGTCCTGCACGACACC 
CTGGAAGACACGGCGACCTCACCCGAGGAGCTGCGGCAACAGTTCGGCGAGTTCGTCTGTGCCGGCGTGCAG 
GCCCTGAGCAAGCGCGTGGGCGACGGCCCCAAGCGTTCCCTCGACGACTATCTCCAGGCGCTTGCCGAGGGC 
CCGGCGCAGTACGCCCTGGTCAAGCTGTGCGACCGCATCACCAACCTGCAGCCACCGCCGCAGACCTGGAGC 
CAGGACAAGATCGCGAACTACCACCAGGAGTCGCAGCTGATCCTCGCTCGCCTCGGCCATGCCCACGCCGCG 
ACGGCCCGACGCCTGCGGGAAAAAATCGAGCACTACCGCCAGTACTACTGA