ViewGene
Locus Name:
GeneID:
Location:

GeneID:404
TrivialName: PA14_24600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24600
PAO1 Ortholog Locus:PA3054
Sequence Length:1905
Protein Length:634
Start: 2151071
Stop: 2149167
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06442.1|AE004730_6 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 626/634 (98%), Positives = 630/634 (99%)
Sequence:
GTGTTCCCTTGCCAACCCCGTTCGCTACTCGCCGGCGTCCTGCTGGCGAGCGCCCTGCCCGCTCACGCGGAG
CTGCCCCACGCGCCCGCCTACATCGATGACAGCGCCTACCCGGCCGCGGCCCGCCAACGCATCCTGCCACCG
ATGTTCGAGCAGAAGCTGGGCAGCCTGCGCTACCTGGCCAAGCCCGGCGACCCCTTGATCACCCAGGCCGAG
AGCAGCGACTTCCAGCGCACCAGCGACTACCGCGAGACCCGCGCCTACCTGGAGAAACTGGTAGCCGCCTCC
TCCGGCCGCATCGCCTTGCGCGAGTTGCCCGAGCGCAGCGCCGAGGGTCACCCGATGCTGCTGGTGACCGCC
TCCACCGAGACCGACAAGTCCGCCGCCGGCCTGAAGCGCTCCGCCAAGCCGACCTTGCTGGTGGAAGCCGAG
ATCCATCCCGGCGAGGCCAACGGCAAGGACGCCATGTTCATGCTGCTGCGCGACATGAGCGCTGCCGACCGC
CCGCTCGCCGGGCTGCTGGAGAAGATCAACCTGCTGTTCATCCCGGTGGTCAACGTCGACGGCGACCTGCGC
CGCAGCGCCTACGGGCGGATCAACCAGAACGGCCCGCGGGAGACCGGCTGGCGGGTGAACGGCCGCAATCTC
AATCTCAACCGCGACTTCACCAAGCTCGACAGCGCGGAGATCCGCAACGTCGCCTGGGTGTTCAACCACTAC
GAACTGAGCTTCTTCGCCGACACTCACTCCACCGACGGCGCCATGTATCCCTACGACAGCTCCTACTGCCAC
AACGGCAATGGCTGGTCACCGGCGAGCAGCGCCTGGATGGACCAGGTCATGCGCAAGCCGGTGTACCAGGCG
CTGGAAAGCCTCGGGCACATGGTCCATGAATGCATCAGCCTGAACGACAACCAGGATCCGACCCAGGGCTAC
TACCCCTACCGCACCGACCTGGCGCGCTTCTCCAACCAGTACGGCGACATCCGCAACGTGCCGTCGATCCTC
ATCGAGCAACACGCCCTGCATCCGTACAAGACCCAGGTGCTGGGCAACTACGTGATGCTCAAGGCGATGTTC
GAGGTGATCGGCGAGCAGGCCGCCAGCCTGCGCCAGGCCATCGCCAGCGACCGCGAGCGCCTGCTGCGGCAG
AAGGAGGTGATCCTCACCTGGAAGCCGGGCGAGGCCGCCGAGACGCCGTTCGTGGTCGGCGACTACCGCTAC
GAGCAATCGCCGGTCACCGGGGCCCGCACCATCGTCTGGAGCAACCGGCCGAAGACGCTGAAACTACCGGTG
ACCGACAACGGCGTACCCGACCTGGTGGTGCCGCGTCCCCAGCGTTTCATCGTCCCGGCGCAGTGGCACGAA
GTGATCGCCCGGATCAAGGCCCACGGTATCCGCTACACCACCCTGGAACGTCCGACCGAAATCGCCGTGACC
CTGTACCGCATGGACGACATCAAGCTCGCCGATGGCTTCGAACCGGATCGCGTGCAAGGCAACCGGATTCCG
GGCTACGAAGGTCGCCTGCTGGTCAGCGGCACGCCGAAGCCGTTCCAGCGCTTGCAGACCTTCCCGGCCGGC
TCGCTGTCGATCGACACCGCCCAGCCGCTGGGCGTCCTGGCCATCGACCTGCTGCAACCGCAAAGTCCGGAT
TCGTTCTGGTCCTGGGGCTTCTTCAATTCCACCCTGGTGGCCGCCGAGGAGCCGGAGGAATACGTGATGGAG
CCGATGGCGCGCAAGATGCTGGCGGAAGACCCGGCGCTGAAGTCCGCCTTCGACAAACGCCTGCGCGAGGAC
AAGGCCTTCGCCGCCGATCCGCAGGCGCGCCTGCAATGGTTCTACCAGCGCACGCCGTTCTACGACGTGAAC
GCCTTCGTCTATCCGGTAGGAGTGGTGTTCTGA
Translation:
MFPCQPRSLLAGVLLASALPAHAELPHAPAYIDDSAYPAAARQRILPPMFEQKLGSLRYLAKPGDPLITQAE
SSDFQRTSDYRETRAYLEKLVAASSGRIALRELPERSAEGHPMLLVTASTETDKSAAGLKRSAKPTLLVEAE
IHPGEANGKDAMFMLLRDMSAADRPLAGLLEKINLLFIPVVNVDGDLRRSAYGRINQNGPRETGWRVNGRNL
NLNRDFTKLDSAEIRNVAWVFNHYELSFFADTHSTDGAMYPYDSSYCHNGNGWSPASSAWMDQVMRKPVYQA
LESLGHMVHECISLNDNQDPTQGYYPYRTDLARFSNQYGDIRNVPSILIEQHALHPYKTQVLGNYVMLKAMF
EVIGEQAASLRQAIASDRERLLRQKEVILTWKPGEAAETPFVVGDYRYEQSPVTGARTIVWSNRPKTLKLPV
TDNGVPDLVVPRPQRFIVPAQWHEVIARIKAHGIRYTTLERPTEIAVTLYRMDDIKLADGFEPDRVQGNRIP
GYEGRLLVSGTPKPFQRLQTFPAGSLSIDTAQPLGVLAIDLLQPQSPDSFWSWGFFNSTLVAAEEPEEYVME
PMARKMLAEDPALKSAFDKRLREDKAFAADPQARLQWFYQRTPFYDVNAFVYPVGVVF*
AnnotationID:413GeneID:404
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 09:09:46
Gene Name:
Confidence Code:3
GeneProduct:putative carboxypeptidase
Cell Localization:()
Synonyms:PA3054
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2866
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2866, Predicted carboxypeptidase 
[Amino acid transport and metabolism]
CD-Length = 374 residues,  84.5% aligned
Score =  182 bits (463), Expect = 1e-46
Identities = 65/316 (20%), Positives = 100/316 (31%), Gaps = 21/316 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17953




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32449




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:404_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:404
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
688
                           PA3054_tr
                           translation of PA3054
                           634
                           98.73
                           99.36
                           0
                           3280.0
     

     
     
31286
                           gb|AAG06442.1|AE004730_6
                           (AE004730) hypothetical protein PA3054 [Pseudomonas aeruginosa PAO1]
                           634
                           98.58
                           99.36
                           0
                           3277.0
     

     
     
31287
                           gb|AAQ58944.1|
                           (AE016914) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           639
                           55.24
                           67.76
                           13
                           1800.0
     

     
     
31288
                           gb|AAN53239.1|AE015465_10
                           (AE015465) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           669
                           37.96
                           52.76
                           77
                           1104.0
     

     






      

          
GC ORFID: 43406How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3054Glimmer Score: 

          
Start: 2802858Stop: 2804762

          
Length: 1905


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3054 translation of PA3054Homolog Bit Score 1268.0

          
Other Homologs:  t_PA3054 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTTCCCTTGCCAACCCCGTTCGCTACTCGCCGGCGTCCTGCTGGCGAGCGCCCTGCCCGCTCACGCGGAG 
CTGCCCCACGCGCCCGCCTACATCGATGACAGCGCCTACCCGGCCGCGGCCCGCCAACGCATCCTGCCACCG 
ATGTTCGAGCAGAAGCTGGGCAGCCTGCGCTACCTGGCCAAGCCCGGCGACCCCTTGATCACCCAGGCCGAG 
AGCAGCGACTTCCAGCGCACCAGCGACTACCGCGAGACCCGCGCCTACCTGGAGAAACTGGTAGCCGCCTCC 
TCCGGCCGCATCGCCTTGCGCGAGTTGCCCGAGCGCAGCGCCGAGGGTCACCCGATGCTGCTGGTGACCGCC 
TCCACCGAGACCGACAAGTCCGCCGCCGGCCTGAAGCGCTCCGCCAAGCCGACCTTGCTGGTGGAAGCCGAG 
ATCCATCCCGGCGAGGCCAACGGCAAGGACGCCATGTTCATGCTGCTGCGCGACATGAGCGCTGCCGACCGC 
CCGCTCGCCGGGCTGCTGGAGAAGATCAACCTGCTGTTCATCCCGGTGGTCAACGTCGACGGCGACCTGCGC 
CGCAGCGCCTACGGGCGGATCAACCAGAACGGCCCGCGGGAGACCGGCTGGCGGGTGAACGGCCGCAATCTC 
AATCTCAACCGCGACTTCACCAAGCTCGACAGCGCGGAGATCCGCAACGTCGCCTGGGTGTTCAACCACTAC 
GAACTGAGCTTCTTCGCCGACACTCACTCCACCGACGGCGCCATGTATCCCTACGACAGCTCCTACTGCCAC 
AACGGCAATGGCTGGTCACCGGCGAGCAGCGCCTGGATGGACCAGGTCATGCGCAAGCCGGTGTACCAGGCG 
CTGGAAAGCCTCGGGCACATGGTCCATGAATGCATCAGCCTGAACGACAACCAGGATCCGACCCAGGGCTAC 
TACCCCTACCGCACCGACCTGGCGCGCTTCTCCAACCAGTACGGCGACATCCGCAACGTGCCGTCGATCCTC 
ATCGAGCAACACGCCCTGCATCCGTACAAGACCCAGGTGCTGGGCAACTACGTGATGCTCAAGGCGATGTTC 
GAGGTGATCGGCGAGCAGGCCGCCAGCCTGCGCCAGGCCATCGCCAGCGACCGCGAGCGCCTGCTGCGGCAG 
AAGGAGGTGATCCTCACCTGGAAGCCGGGCGAGGCCGCCGAGACGCCGTTCGTGGTCGGCGACTACCGCTAC 
GAGCAATCGCCGGTCACCGGGGCCCGCACCATCGTCTGGAGCAACCGGCCGAAGACGCTGAAACTACCGGTG 
ACCGACAACGGCGTACCCGACCTGGTGGTGCCGCGTCCCCAGCGTTTCATCGTCCCGGCGCAGTGGCACGAA 
GTGATCGCCCGGATCAAGGCCCACGGTATCCGCTACACCACCCTGGAACGTCCGACCGAAATCGCCGTGACC 
CTGTACCGCATGGACGACATCAAGCTCGCCGATGGCTTCGAACCGGATCGCGTGCAAGGCAACCGGATTCCG 
GGCTACGAAGGTCGCCTGCTGGTCAGCGGCACGCCGAAGCCGTTCCAGCGCTTGCAGACCTTCCCGGCCGGC 
TCGCTGTCGATCGACACCGCCCAGCCGCTGGGCGTCCTGGCCATCGACCTGCTGCAACCGCAAAGTCCGGAT 
TCGTTCTGGTCCTGGGGCTTCTTCAATTCCACCCTGGTGGCCGCCGAGGAGCCGGAGGAATACGTGATGGAG 
CCGATGGCGCGCAAGATGCTGGCGGAAGACCCGGCGCTGAAGTCCGCCTTCGACAAACGCCTGCGCGAGGAC 
AAGGCCTTCGCCGCCGATCCGCAGGCGCGCCTGCAATGGTTCTACCAGCGCACGCCGTTCTACGACGTGAAC 
GCCTTCGTCTATCCGGTAGGAGTGGTGTTCTGA