ViewGene

Locus Name:
GeneID:
Location:

GeneID:4038
TrivialName: PA14_18950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18950
PAO1 Ortholog Locus:PA3489
Sequence Length:585
Protein Length:194
Start: 1634357
Stop: 1633773
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06877.1|AE004770_2 (AE004770) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 194/194 (100%), Positives = 194/194 (100%)
Sequence:
ATGACTGAACTCGCCCTGATCCTGGTCAGTGCCATCCTGGTCAACAACTTTGTCCTGGTGCAGTTCCTCGGC
CTGTGCCCGTTCATGGGCGTGTCGCGGAAGATCGAGACGGCCATCGGCCTGTCCCTCGCCACCACCTTCGTC
CTGACCCTGGCGGCGATGTGCAGCCATATCCTGCAACGCTACGTGCTGCGCCCGCTGGACCTGGAGTACCTG
CGCACCATCGGCTTCATCCTGGTGATCGCGGTGGTGGTGCAGTTCACCGAGATGCTGGTGAAGAAGACCAGC
CCGCTGCTGTACCGGGTGCTCGGCATCTTCCTGCCGCTGATCACCACCAATTGCATCGTCCTCGGCGTCGCC
CTGCTCAACGCCAACAAGGCTGAATACGGCTTCCTCCAGGCCACTACCCAGGGCTTCGGCGCCGGGCTGGGC
TTTTCCCTGGTGCTGGTGCTGTTCGCCGCCCTGCGCGAGCGCATCGCCATCGCCGACGTGCCGGCGCCGTTC
CGCGGCGCGGCCATCGGCATGATCACCGCCGGCCTGATGTCGCTGGCGTTCATGGGCTTCAGCGGGTTGGTC
CGGCCATGA
Translation:
MTELALILVSAILVNNFVLVQFLGLCPFMGVSRKIETAIGLSLATTFVLTLAAMCSHILQRYVLRPLDLEYL
RTIGFILVIAVVVQFTEMLVKKTSPLLYRVLGIFLPLITTNCIVLGVALLNANKAEYGFLQATTQGFGAGLG
FSLVLVLFAALRERIAIADVPAPFRGAAIGMITAGLMSLAFMGFSGLVRP*
AnnotationID:4045GeneID:4038
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 12:12:23
Gene Name:
Confidence Code:3
GeneProduct:putative NADH:ubiquinone oxidoreductase, subunit RnfA
Cell Localization:()
Synonyms:rnfA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative electron transport complex protein rnfA
Functional Category Confidence Code:5
COGs:pfam02508,COG4657,COG2209
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAF94178.1| (AE004183) RnfA-related protein [Vibrio cholerae]
          Length = 213

 Score =  285 bits (728), Expect = 1e-76
 Identities = 141/193 (73%), Positives = 172/193 (89%), Gaps = 1/193 (0%)

>gb|AAN80479.1|AE016761_54 (AE016761) Electron transport complex protein rnfA [Escherichia
           coli CFT073]
          Length = 193

 Score =  274 bits (700), Expect = 2e-73
 Identities = 137/193 (70%), Positives = 168/193 (87%), Gaps = 1/193 (0%)

>gb|AAP95363.1| (AE017152) probable Na+-translocating NADH-quinone oxidoreductase
           [Haemophilus ducreyi 35000HP]
          Length = 193

 Score =  263 bits (671), Expect = 6e-70
 Identities = 129/193 (66%), Positives = 166/193 (86%), Gaps = 1/193 (0%)

Structural Features:
pfam02508, Rnf-Nqr, Rnf-Nqr subunit, membrane protein.
CD-Length = 192 residues,  99.5% aligned
Score =  185 bits (471), Expect = 3e-48
Identities = 109/192 (56%), Positives = 137/192 (71%), Gaps = 1/192 (0%)

COG4657, RnfA, Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 
[Energy production and conversion]
CD-Length = 193 residues, 100.0% aligned
Score =  252 bits (646), Expect = 2e-68
Identities = 143/194 (73%), Positives = 171/194 (88%), Gaps = 1/194 (0%)

COG2209, NqrE, Na+-transporting NADH:ubiquinone oxidoreductase, 
subunit NqrE 
[Energy production and conversion]
CD-Length = 198 residues,  96.0% aligned
Score =  144 bits (364), Expect = 7e-36
Identities = 82/191 (42%), Positives = 117/191 (61%), Gaps = 7/191 (3%)
Genomic Context:
Comment:
ReferenceID:8078
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25221
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32055
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4038_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4038

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6278 PA3489_tr translation of PA3489 194 99.99 99.99 0 946.0
173035 gb|AAG06877.1|AE004770_2 (AE004770) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 194 99.99 99.99 0 946.0
173043 emb|CAD01908.1| (AL627271) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] 194 71.13 86.08 1 702.0
173042 gb|AAO68977.1| (AE016838) putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] 194 71.13 86.08 1 702.0
173041 gb|AAL20381.1| (AE008763) putative inner membrane oxidoreductase protein [Salmonella typhimurium LT2] 194 71.13 86.08 1 702.0
GC ORFID: 47040How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3489Glimmer Score:
Start: 3319577Stop: 3320161
Length: 585
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3489 translation of PA3489Homolog Bit Score 369.0
Other Homologs: t_PA3489 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGAACTCGCCCTGATCCTGGTCAGTGCCATCCTGGTCAACAACTTTGTCCTGGTGCAGTTCCTCGGC
CTGTGCCCGTTCATGGGCGTGTCGCGGAAGATCGAGACGGCCATCGGCCTGTCCCTCGCCACCACCTTCGTC
CTGACCCTGGCGGCGATGTGCAGCCATATCCTGCAACGCTACGTGCTGCGCCCGCTGGACCTGGAGTACCTG
CGCACCATCGGCTTCATCCTGGTGATCGCGGTGGTGGTGCAGTTCACCGAGATGCTGGTGAAGAAGACCAGC
CCGCTGCTGTACCGGGTGCTCGGCATCTTCCTGCCGCTGATCACCACCAATTGCATCGTCCTCGGCGTCGCC
CTGCTCAACGCCAACAAGGCTGAATACGGCTTCCTCCAGGCCACTACCCAGGGCTTCGGCGCCGGGCTGGGC
TTTTCCCTGGTGCTGGTGCTGTTCGCCGCCCTGCGCGAGCGCATCGCCATCGCCGACGTGCCGGCGCCGTTC
CGCGGCGCGGCCATCGGCATGATCACCGCCGGCCTGATGTCGCTGGCGTTCATGGGCTTCAGCGGGTTGGTC
CGGCCATGA