ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4036

TrivialName: PA14_33260

AnnotatorUID: debug

Modification Date/Time: 2006-08-22 21:09:01

LocusName: PA14_33260

PAO1 Ortholog Locus: PA2426

Sequence Length: 564

Protein Length: 187

Start: 2910617

Stop: 2910054

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05814.1|AE004670_2 (AE004670) sigma factor PvdS [Pseudomonas aeruginosa PAO1] Identities = 187/187 (100%), Positives = 187/187 (100%)

Sequence:

ATGTCGGAACAACTGTCTACCCGCAGATGCGATACCCCGCTCCTCCAGGCATTCGTCGATAACCGTACGATC
CTGGTGAAGATCGCCGCCCGCATTACCGGTTGCCGCTCGCGAGCCGAAGATGTGGTCCAGGATGCGTTCTTC
AGGCTCCAGTCGGCGCCGCAGATCACTTCGTCGTTCAAGGCACAGCTCAGCTACCTGTTCCAGATCGTCCGC
AACCTGGCCATCGATCACTACCGCAAGCAGGCGCTCGAACAGAAATACTCGGGGCCGGAGGAAGAAGGCCTG
AACGTGGTGATCCAGGGCGCCTCGCCGGAAACCTCGCACATCAACTACGCGACCCTCGAACACATCGCGGAT
GCCCTCACCGAGCTGCCCAAGCGCACCCGCTACGCCTTCGAGATGTACCGCCTGCACGGCGTGCCGCAGAAG
GACATCGCCAAGGAACTGGGCGTCTCGCCGACCCTGGTCAACTTCATGATCCGCGACGCCCTGGTGCACTGC
CGCAAGGTCACCGCCGAGCGCCAGGGCGACAACGTCACCCATCTCAGCGCCCGTCGCTGA

Translation:

MSEQLSTRRCDTPLLQAFVDNRTILVKIAARITGCRSRAEDVVQDAFFRLQSAPQITSSFKAQLSYLFQIVR
NLAIDHYRKQALEQKYSGPEEEGLNVVIQGASPETSHINYATLEHIADALTELPKRTRYAFEMYRLHGVPQK
DIAKELGVSPTLVNFMIRDALVHCRKVTAERQGDNVTHLSARR*

AnnotationID:4043 GeneID:4036

AnnotatorUID: danlee

Modification Date/Time: 2004-03-08 12:12:11

Gene Name: pvdS

Confidence Code: 1

GeneProduct: sigma factor PvdS

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:8074

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:25217

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:4036

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6276 PA2426_tr translation of PA2426 187 99.99 99.99 0 948.0

173024 gb|AAG05814.1|AE004670_2 (AE004670) sigma factor PvdS [Pseudomonas aeruginosa PAO1] 187 99.99 99.99 0 948.0

173025 dbj|BAA07851.1| (D43793) PvdS [Pseudomonas aeruginosa] 187 99.99 99.99 0 948.0

173026 gb|AAB09714.1| (U12891) PvdS [Pseudomonas aeruginosa] 187 99.46 99.46 0 940.0

173027 gb|AAM45146.1|AF279913_1 (AF279913) PsbS [Pseudomonas sp. B10] 187 88.23 93.04 3 822.0

GC ORFID: `47038`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2426`	Glimmer Score:
Start: `2043299`	Stop: `2043862`
Length: `564`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2426 translation of PA2426`	Homolog Bit Score `369.0`
Other Homologs: `psyr_15may02_Scaffold1_revised_gene497 (ORF: BLASTX 296.0), t_PA2426 (ORF: GLIMMER)`
GC ORF Sequence
ATGTCGGAACAACTGTCTACCCGCAGATGCGATACCCCGCTCCTCCAGGCATTCGTCGATAACCGTACGATC CTGGTGAAGATCGCCGCCCGCATTACCGGTTGCCGCTCGCGAGCCGAAGATGTGGTCCAGGATGCGTTCTTC AGGCTCCAGTCGGCGCCGCAGATCACTTCGTCGTTCAAGGCACAGCTCAGCTACCTGTTCCAGATCGTCCGC AACCTGGCCATCGATCACTACCGCAAGCAGGCGCTCGAACAGAAATACTCGGGGCCGGAGGAAGAAGGCCTG AACGTGGTGATCCAGGGCGCCTCGCCGGAAACCTCGCACATCAACTACGCGACCCTCGAACACATCGCGGAT GCCCTCACCGAGCTGCCCAAGCGCACCCGCTACGCCTTCGAGATGTACCGCCTGCACGGCGTGCCGCAGAAG GACATCGCCAAGGAACTGGGCGTCTCGCCGACCCTGGTCAACTTCATGATCCGCGACGCCCTGGTGCACTGC CGCAAGGTCACCGCCGAGCGCCAGGGCGACAACGTCACCCATCTCAGCGCCCGTCGCTGA