ViewGene
Locus Name:
GeneID:
Location:

GeneID:4035
TrivialName: PA14_36980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36980
PAO1 Ortholog Locus:PA2134
Sequence Length:573
Protein Length:190
Start: 3293907
Stop: 3293335
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05522.1|AE004641_1 (AE004641) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 190/190 (100%), Positives = 190/190 (100%)
Sequence:
GTGCCGAAGTCCCGGCATTTTTTCCCTGTCACGCCAACGGAGTCGACCATGAACAGAGCAATCAGCCTTCCC
CTCAAGGGAGCCGCCTGGCTCCTGCTGGTCCTGGCCCTGCCTTTCGCCAACGCCCAGGACATGAACAAGACC
GCGCCACAGACCTTCGTCAGCGAGGCCTCGGCGGCCGGCGTGGCGGAAATCGAAGCCGGCAAGATGGCGCTG
GAAAAGAGCACCGCCGCCGATGTGAAGGTATTCGCCAAGCAGATGATCGACGACCACGGCAAGGTCAACGCC
GAACTGCGCAGCCTGGCCGAGCGCAAGAAACTGGAGGTCGAAGACGACGCCAGCCTGACCGACAAGGCCAAG
GCGACCCTGCTCGACCTGCGCGACGCCTCCTTCGACCCGGCCTACGCCAACAACCAGGTGGCGGCCCACGAG
AAAGCCGTGGAACTCTTCACCCAGGCCGCAGACAACCTCACCGACCCGGAACTGCAGGCCTTCGCCAAGACC
CACCTGCCGGCCCTGAAGCACCACCTGGAAATGGCCCGCGCGCTGGCCAAGGCGCACCCATCCAAGTAA
Translation:
MPKSRHFFPVTPTESTMNRAISLPLKGAAWLLLVLALPFANAQDMNKTAPQTFVSEASAAGVAEIEAGKMAL
EKSTAADVKVFAKQMIDDHGKVNAELRSLAERKKLEVEDDASLTDKAKATLLDLRDASFDPAYANNQVAAHE
KAVELFTQAADNLTDPELQAFAKTHLPALKHHLEMARALAKAHPSK*
AnnotationID:4042GeneID:4035
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:43
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein
Cell Localization:()
Synonyms:PA2134
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3652
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3652, COG3652, Predicted outer membrane protein
CD-Length = 170 residues, 100.0% aligned
Score =  144 bits (363), Expect = 8e-36
Identities = 78/172 (45%), Positives = 103/172 (59%), Gaps = 5/172 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14994




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25215




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32590




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4035_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4035
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6275
                           PA2134_tr
                           translation of PA2134
                           190
                           99.99
                           99.99
                           0
                           948.0
     

     
     
173020
                           gb|AAG05522.1|AE004641_1
                           (AE004641) hypothetical protein PA2134 [Pseudomonas aeruginosa PAO1]
                           190
                           99.47
                           99.99
                           0
                           945.0
     

     
     
173022
                           emb|CAE32034.1|
                           (BX640441) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           210
                           39.52
                           51.42
                           39
                           324.0
     

     
     
173021
                           gb|AAN68848.1|AE016517_8
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           190
                           39.47
                           55.78
                           24
                           331.0
     

     
     
173023
                           emb|CAE37440.1|
                           (BX640429) putative exported protein [Bordetella parapertussis]
                           210
                           38.57
                           50.47
                           39
                           315.0
     

     






      

          
GC ORFID: 47037How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2134Glimmer Score: 

          
Start: 1660007Stop: 1660579

          
Length: 573


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2134 translation of PA2134Homolog Bit Score 369.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4148 (ORF: BLASTX 152.0), t_PA2134 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGAAGTCCCGGCATTTTTTCCCTGTCACGCCAACGGAGTCGACCATGAACAGAGCAATCAGCCTTCCC 
CTCAAGGGAGCCGCCTGGCTCCTGCTGGTCCTGGCCCTGCCTTTCGCCAACGCCCAGGACATGAACAAGACC 
GCGCCACAGACCTTCGTCAGCGAGGCCTCGGCGGCCGGCGTGGCGGAAATCGAAGCCGGCAAGATGGCGCTG 
GAAAAGAGCACCGCCGCCGATGTGAAGGTATTCGCCAAGCAGATGATCGACGACCACGGCAAGGTCAACGCC 
GAACTGCGCAGCCTGGCCGAGCGCAAGAAACTGGAGGTCGAAGACGACGCCAGCCTGACCGACAAGGCCAAG 
GCGACCCTGCTCGACCTGCGCGACGCCTCCTTCGACCCGGCCTACGCCAACAACCAGGTGGCGGCCCACGAG 
AAAGCCGTGGAACTCTTCACCCAGGCCGCAGACAACCTCACCGACCCGGAACTGCAGGCCTTCGCCAAGACC 
CACCTGCCGGCCCTGAAGCACCACCTGGAAATGGCCCGCGCGCTGGCCAAGGCGCACCCATCCAAGTAA