ViewGene

Locus Name:
GeneID:
Location:

GeneID:4033
TrivialName: PA14_01310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01310
PAO1 Ortholog Locus:PA0107
Sequence Length:555
Protein Length:184
Start: 128030
Stop: 128584
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03497.1|AE004449_6 (AE004449) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 184/184 (100%), Positives = 184/184 (100%)
Sequence:
ATGAGCGATGCCAAGGTCGATACCCGCCGCCTGGTCGGCCGCCTGCTGCTGGTGACCGTGCTGATGTTCGCC
TTCGGCTTCGCCCTGGTGCCGCTCTACGACGTGATGTGCCGCGCCCTGGGGATCAACGGCAAGACCGCCGGC
AGCGCCTACAGCGGCGAACAGCAGGTGGATGTCGGGCGCGAGGTGAAGGTGCAGTTCATGACCTCGAACAAT
ATCGACATGGTCTGGGAGTTCCGCTCCGCCGGCGACCAGTTGGTGGTGCATCCCGGCGCGGTGAACCAGATG
GTGTTCTACGCGCGCAACCCGAGCGACAAGCCGATGACCGCGCAGGCCATCCCGAGCATCGCCCCGGCCGAG
GCCGCCGCCTACTTCCACAAGACCGAATGCTTCTGTTTCACCCAGCAGGTGCTGCAACCCGGCGAGAGCATC
GAGATGCCGGTGCGCTTCATCGTCGACCGCGATCTGCCCAAGGATGTGCGGCACGTGACGCTGGCCTACACC
CTCTTCGATATCACTGCGCGGAAGCCGCCCGTACCGGTTGCGGGACGATAA
Translation:
MSDAKVDTRRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGINGKTAGSAYSGEQQVDVGREVKVQFMTSNN
IDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYFHKTECFCFTQQVLQPGESI
EMPVRFIVDRDLPKDVRHVTLAYTLFDITARKPPVPVAGR*
AnnotationID:4040GeneID:4033
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:19
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c oxidase assembly protein
Cell Localization:()
Synonyms:coxG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3175,pfam04442
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65739.1|AE016200_3 (AE016774) cytochrome c oxidase assembly protein [Pseudomonas
           putida KT2440]
          Length = 188

 Score =  265 bits (678), Expect = 8e-71
 Identities = 129/174 (74%), Positives = 147/174 (84%), Gaps = 1/174 (0%)

>gb|AAO58684.1| (AE016875) cytochrome c oxidase assembly protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 162

 Score =  199 bits (506), Expect = 7e-51
 Identities = 95/169 (56%), Positives = 123/169 (72%), Gaps = 12/169 (7%)

>gb|AAN57568.1|AE015892_8 (AE015892) cytochrome c oxidase assembly protein coxG [Shewanella
           oneidensis MR-1]
          Length = 193

 Score =  166 bits (419), Expect = 9e-41
 Identities = 83/169 (49%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Structural Features:
COG3175, COX11, Cytochrome oxidase assembly factor 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 195 residues,  92.8% aligned
Score =  229 bits (584), Expect = 2e-61
Identities = 77/183 (42%), Positives = 102/183 (55%), Gaps = 8/183 (4%)

pfam04442, CtaG_Cox11, Cytochrome c oxidase assembly protein CtaG / Cox11.
CD-Length = 156 residues,  99.4% aligned
Score =  189 bits (481), Expect = 2e-49
Identities = 62/155 (40%), Positives = 88/155 (56%), Gaps = 12/155 (7%)
Genomic Context:
Comment:
ReferenceID:8068
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25211
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33484
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4033_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4033

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6273 PA0107_tr translation of PA0107 184 99.99 99.99 0 950.0
172960 gb|AAG03497.1|AE004449_6 (AE004449) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 184 99.99 99.99 0 950.0
172961 gb|AAN65739.1|AE016200_3 (AE016774) cytochrome c oxidase assembly protein [Pseudomonas putida KT2440] 191 69.63 79.58 10 674.0
172962 gb|AAO58684.1| (AE016875) cytochrome c oxidase assembly protein [Pseudomonas syringae pv. tomato str. DC3000] 188 51.59 65.95 30 509.0
172964 dbj|BAC61881.1| (AP005085) putative cytochrome c oxidase assembly transmembrane protein [Vibrio parahaemolyticus] 187 45.98 61.49 11 403.0
GC ORFID: 47035How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0107Glimmer Score:
Start: 5929369Stop: 5929923
Length: 555
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0107 translation of PA0107Homolog Bit Score 370.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3882 (ORF: BLASTX 182.0), t_PA0107 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGATGCCAAGGTCGATACCCGCCGCCTGGTCGGCCGCCTGCTGCTGGTGACCGTGCTGATGTTCGCC
TTCGGCTTCGCCCTGGTGCCGCTCTACGACGTGATGTGCCGCGCCCTGGGGATCAACGGCAAGACCGCCGGC
AGCGCCTACAGCGGCGAACAGCAGGTGGATGTCGGGCGCGAGGTGAAGGTGCAGTTCATGACCTCGAACAAT
ATCGACATGGTCTGGGAGTTCCGCTCCGCCGGCGACCAGTTGGTGGTGCATCCCGGCGCGGTGAACCAGATG
GTGTTCTACGCGCGCAACCCGAGCGACAAGCCGATGACCGCGCAGGCCATCCCGAGCATCGCCCCGGCCGAG
GCCGCCGCCTACTTCCACAAGACCGAATGCTTCTGTTTCACCCAGCAGGTGCTGCAACCCGGCGAGAGCATC
GAGATGCCGGTGCGCTTCATCGTCGACCGCGATCTGCCCAAGGATGTGCGGCACGTGACGCTGGCCTACACC
CTCTTCGATATCACTGCGCGGAAGCCGCCCGTACCGGTTGCGGGACGATAA