ViewGene
Locus Name:
GeneID:
Location:

GeneID:4032
TrivialName: PA14_64680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64680
PAO1 Ortholog Locus:PA4894
Sequence Length:573
Protein Length:190
Start: 5760447
Stop: 5761019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08279.1|AE004902_7 (AE004902) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/190 (99%), Positives = 189/190 (99%)
Sequence:
ATGAAACTGCCCAAGCTGCTCGCCGCCCTCGCCCTGCTCGCCGCGCCGGCGCTGGCCTTCGCCCACCCCGGC
CACGGCGAACACGGCCTGGTCGCCGGCCTCGCCCATCCGCTCACCGGCCTCGACCACCTGCTGGCGATGTTC
GCCGTCGGCCTCTGGGCCGCCCAGCAACAGGGAGCCGCGCGCCTCGCCCTGCCCTGCACCTTCGTCGGCACC
ATGCTGGTCGGCGGGCTGCTCGGCTtcgaGGGCCTGCAACTGCCGTTCATGGAGACCGGCATCGCCGCCTCG
GTGCTCGCCCTCGGCCTCTGCGTGGCCCTCGCCGTGCGCCCGCCGCTGGCGCTGGCGATGGCCGCCACCGCG
CTGTTCGCCCTGGCCCACGGGGTCGCCCACGGCCTGGAGCTGCCGGACCTCTCCAGCCCCTGGCTGTACGCG
CTCGGTTTCGTCGCCGCCACCGCCGCGCTGCACGCCGCCGGCTACGCGCTGGTGCGCTTCCTGCCGCAGGCG
GCCGCGCCCCTGGTACGTCTCGCCGGGCTGGCCTCGGCGGGCGCCGGGGTCTGGTTGCTGGCCGGCTGA
Translation:
MKLPKLLAALALLAAPALAFAHPGHGEHGLVAGLAHPLTGLDHLLAMFAVGLWAAQQQGAARLALPCTFVGT
MLVGGLLGFEGLQLPFMETGIAASVLALGLCVALAVRPPLALAMAATALFALAHGVAHGLELPDLSSPWLYA
LGFVAATAALHAAGYALVRFLPQAAAPLVRLAGLASAGAGVWLLAG*
AnnotationID:4039GeneID:4032
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 13:01:02
Gene Name:ureJ
Confidence Code:2
GeneProduct:urease accessory protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04955,COG2370
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58340.1| (AE016873) urease accessory protein, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 190

 Score =  308 bits (790), Expect = 9e-84
 Identities = 154/190 (81%), Positives = 168/190 (88%)








 
Structural Features:
pfam04955, HupE_UreJ, HupE / UreJ protein. 
CD-Length = 180 residues, 100.0% aligned
Score =  139 bits (352), Expect = 2e-34
Identities = 109/180 (60%), Positives = 122/180 (67%), Gaps = 1/180 (0%)

COG2370, HupE, Hydrogenase/urease accessory protein 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 201 residues,  94.0% aligned
Score =  125 bits (315), Expect = 3e-30
Identities = 111/189 (58%), Positives = 124/189 (65%), Gaps = 3/189 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8066




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25209




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35166




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4032_cdd.html


    		




 
URL:

















    ReferenceID:35936




  
Author/Investigator(s):
        McMillan DJ, Mau M, Walker MJ.





  
Title:
        Characterisation of the urease gene cluster in Bordetella bronchiseptica.




  
PubMed:
        9524276


MedLine:
        




    
Source:
Gene. 1998 Feb 27;208(2):243-51.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9524276









           
Homologs By Global Alignment 

           

       



     
Gene ID:4032
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6272
                           PA4894_tr
                           translation of PA4894
                           190
                           99.47
                           99.47
                           0
                           950.0
     

     
     
172930
                           gb|AAG08279.1|AE004902_7
                           (AE004902) hypothetical protein PA4894 [Pseudomonas aeruginosa PAO1]
                           190
                           99.47
                           99.47
                           0
                           950.0
     

     
     
172931
                           gb|AAO58340.1|
                           (AE016873) urease accessory protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           190
                           81.05
                           88.42
                           0
                           790.0
     

     
     
172932
                           emb|CAE26409.1|
                           (BX572596) putative membrane-bound hydrogenase component hupE [Rhodopseudomonas palustris CGA009]
                           199
                           50.25
                           58.29
                           11
                           413.0
     

     
     
172937
                           gb|AAF12462.1|AE001863_87
                           (AE001863) urease accessory protein UreJ [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           191
                           48.16
                           58.11
                           7
                           351.0
     

     






      

          
GC ORFID: 47034How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4894Glimmer Score: 

          
Start: 5024128Stop: 5024700

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4894 translation of PA4894Homolog Bit Score 370.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5825 (ORF: BLASTX 303.0), t_PA4894 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGCCCAAGCTGCTCGCCGCCCTCGCCCTGCTCGCCGCGCCGGCGCTGGCCTTCGCCCACCCCGGC 
CACGGCGAACACGGCCTGGTCGCCGGCCTCGCCCATCCGCTCACCGGCCTCGACCACCTGCTGGCGATGTTC 
GCCGTCGGCCTCTGGGCCGCCCAGCAACAGGGAGCCGCGCGCCTCGCCCTGCCCTGCACCTTCGTCGGCACC 
ATGCTGGTCGGCGGGCTGCTCGGCTtcgaGGGCCTGCAACTGCCGTTCATGGAGACCGGCATCGCCGCCTCG 
GTGCTCGCCCTCGGCCTCTGCGTGGCCCTCGCCGTGCGCCCGCCGCTGGCGCTGGCGATGGCCGCCACCGCG 
CTGTTCGCCCTGGCCCACGGGGTCGCCCACGGCCTGGAGCTGCCGGACCTCTCCAGCCCCTGGCTGTACGCG 
CTCGGTTTCGTCGCCGCCACCGCCGCGCTGCACGCCGCCGGCTACGCGCTGGTGCGCTTCCTGCCGCAGGCG 
GCCGCGCCCCTGGTACGTCTCGCCGGGCTGGCCTCGGCGGGCGCCGGGGTCTGGTTGCTGGCCGGCTGA