ViewGene
Locus Name:
GeneID:
Location:

GeneID:4031
TrivialName: PA14_61140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61140
PAO1 Ortholog Locus:PA4620
Sequence Length:540
Protein Length:179
Start: 5451903
Stop: 5451364
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08008.1|AE004876_3 (AE004876) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 179/179 (100%), Positives = 179/179 (100%)
Sequence:
ATGGCTAACCGCAAGCTCCAGATGACCCTCAACGGTCAAGCCGTCGGTCCGGTGGAGGTCGCCGAAGACCTG
CCGATGATCGACTACCTGCACGAATACCAGAACCTCACCGGCTCGCGCCTGGGCTGTGGCCAGGGCATCTGC
CATGCCTGCGTGGTGATCGTCGACAATCCGGACGGCACCAGCGAGGAAGTGCGCACCTGCATCACCGGCGCG
CACTACTTCGACGGCAAGAAGGTTCGCACCATCGAGGGCCATGCCCAGCGCGACGAGAACGGCGACATCCGC
GAGCTGAACCCGATCCAGCAGAAGTTCGTCGACCAGTTCGCCTTCCAGTGCAGCTATTGCGCGCCGGGCTTC
GTCAACGCCGCCACCGTGCTGGTGGAAAAAGCCCAGCGCCAGCCGATCAAGCGCAGCGAGCTGGAGCAGGCG
ATCGAGGACAGCCTCGGCCATCACATCTGCCGTTGCACCGGCTACGTGCGCTACTACAGCGCCACCCGCGAC
GTGCTCGACGAACTCGGCCTGGTCAAGGAGGCTTGA
Translation:
MANRKLQMTLNGQAVGPVEVAEDLPMIDYLHEYQNLTGSRLGCGQGICHACVVIVDNPDGTSEEVRTCITGA
HYFDGKKVRTIEGHAQRDENGDIRELNPIQQKFVDQFAFQCSYCAPGFVNAATVLVEKAQRQPIKRSELEQA
IEDSLGHHICRCTGYVRYYSATRDVLDELGLVKEA*
AnnotationID:4038GeneID:4031
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 08:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, small subunit
Cell Localization:()
Synonyms:PA4620
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2080
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69814.1|AE016619_12 (AE016789) oxidoreductase, small subunit, putative [Pseudomonas
           putida KT2440]
          Length = 178

 Score =  313 bits (802), Expect = 3e-85
 Identities = 151/178 (84%), Positives = 163/178 (91%), Gaps = 1/178 (0%)








 
Structural Features:
COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, 
small subunit CoxS/CutS homologs 
[Energy production and conversion]
CD-Length = 156 residues,  98.7% aligned
Score =  164 bits (418), Expect = 8e-42
Identities = 60/171 (35%), Positives = 96/171 (56%), Gaps = 17/171 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8064




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31602




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4031_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4031
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6271
                           PA4620_tr
                           translation of PA4620
                           179
                           99.99
                           99.99
                           0
                           951.0
     

     
     
172928
                           gb|AAG08008.1|AE004876_3
                           (AE004876) hypothetical protein PA4620 [Pseudomonas aeruginosa PAO1]
                           179
                           99.99
                           99.99
                           0
                           951.0
     

     
     
172929
                           gb|AAN69814.1|AE016619_12
                           (AE016789) oxidoreductase, small subunit, putative [Pseudomonas putida KT2440]
                           179
                           84.35
                           91.06
                           1
                           804.0
     

     






      

          
GC ORFID: 47033How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4620Glimmer Score: 

          
Start: 4715583Stop: 4715044

          
Length: 540


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4620 translation of PA4620Homolog Bit Score 370.0

          
Other Homologs:  t_PA4620 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTAACCGCAAGCTCCAGATGACCCTCAACGGTCAAGCCGTCGGTCCGGTGGAGGTCGCCGAAGACCTG 
CCGATGATCGACTACCTGCACGAATACCAGAACCTCACCGGCTCGCGCCTGGGCTGTGGCCAGGGCATCTGC 
CATGCCTGCGTGGTGATCGTCGACAATCCGGACGGCACCAGCGAGGAAGTGCGCACCTGCATCACCGGCGCG 
CACTACTTCGACGGCAAGAAGGTTCGCACCATCGAGGGCCATGCCCAGCGCGACGAGAACGGCGACATCCGC 
GAGCTGAACCCGATCCAGCAGAAGTTCGTCGACCAGTTCGCCTTCCAGTGCAGCTATTGCGCGCCGGGCTTC 
GTCAACGCCGCCACCGTGCTGGTGGAAAAAGCCCAGCGCCAGCCGATCAAGCGCAGCGAGCTGGAGCAGGCG 
ATCGAGGACAGCCTCGGCCATCACATCTGCCGTTGCACCGGCTACGTGCGCTACTACAGCGCCACCCGCGAC 
GTGCTCGACGAACTCGGCCTGGTCAAGGAGGCTTGA