ViewGene
Locus Name:
GeneID:
Location:

GeneID:4030
TrivialName: PA14_09940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09940
PAO1 Ortholog Locus:PA4171
Sequence Length:564
Protein Length:187
Start: 854793
Stop: 854230
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07558.1|AE004833_9 (AE004833) probable protease [Pseudomonas aeruginosa PAO1]
Identities = 186/187 (99%), Positives = 187/187 (100%)
Sequence:
ATGAGCGCGAAGCTGCAAGGCAAGAACGTCCTGGTCATCACCGCCAACACCGGCATCGAGCGCGACGAGCTG
CTCGAACCGCTGAAGACCCTGAAGCAACAGGGCGCCACGGTCACCCACGCGACCATCGAGGGCGGCGAAGCG
CAGACCTGGGTGCACGACAGCGAGAAGGACCTGATCGTCAATTCCGACGCCAGGCTGCAAGGCCTGCGCGCC
GAGGACTACGACTTGCTGCTGGTCCCCGGCGGCACGGTGAATGCCGACACCCTGCGCCAGGACAGCGAGGCC
CGGCGCCTGGTCAGGGAATTCAGCGACGCAGGCAAGACGGTCGCCGCCATCTGCCACGGCCCCTGGCTGCTG
ATCGACGCCGGTGTCGCCCGCGGCAAGACCCTGACCTCCTATTCCAGCGTGCGTATCGACCTGACCAACGCC
GGCGCGGACTGGGTCGACACGCGGGTGAAAGTCTGCCCGGCGAACGGCTGGACTCTGATCACCTCGCGCAAC
CCGGGTGACCTGCAGGCGTTCAACGAAGCCATCGGCGAAGCCCTGCAGGCGGCCGCCTGA
Translation:
MSAKLQGKNVLVITANTGIERDELLEPLKTLKQQGATVTHATIEGGEAQTWVHDSEKDLIVNSDARLQGLRA
EDYDLLLVPGGTVNADTLRQDSEARRLVREFSDAGKTVAAICHGPWLLIDAGVARGKTLTSYSSVRIDLTNA
GADWVDTRVKVCPANGWTLITSRNPGDLQAFNEAIGEALQAAA*
AnnotationID:4037GeneID:4030
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 20:08:33
Gene Name:
Confidence Code:3
GeneProduct:putative protease
Cell Localization:(1) Cytoplasmic
Synonyms:pfpI
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0693,pfam01965
Secondary Functional Category(ies):
EC Number:3.2.-.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL44942.1| (AE009344) proteinase [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 186

 Score =  141 bits (356), Expect = 2e-33
 Identities = 77/174 (44%), Positives = 107/174 (61%), Gaps = 5/174 (2%)

>gb|AAN68333.1|AE016467_3 (AE016784) protease PfpI [Pseudomonas putida KT2440]
          Length = 180

 Score =  136 bits (342), Expect = 7e-32
 Identities = 76/183 (41%), Positives = 109/183 (59%), Gaps = 6/183 (3%)







 
Structural Features:
COG0693, ThiJ, Putative intracellular protease/amidase.
CD-Length = 188 residues,  98.4% aligned
Score =  110 bits (276), Expect = 9e-26
Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 10/188 (5%)

pfam01965, DJ-1_PfpI, DJ-1/PfpI family. 
CD-Length = 143 residues,  90.2% aligned
Score =  108 bits (272), Expect = 3e-25
Identities = 56/132 (42%), Positives = 78/132 (59%), Gaps = 5/132 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8062




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36906




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4030_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4030
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6270
                           PA4171_tr
                           translation of PA4171
                           187
                           99.46
                           99.99
                           0
                           950.0
     

     
     
172909
                           gb|AAG07558.1|AE004833_9
                           (AE004833) probable protease [Pseudomonas aeruginosa PAO1]
                           187
                           99.46
                           99.99
                           0
                           950.0
     

     
     
172910
                           dbj|BAC17248.1|
                           (AP005215) conserved hypothetical protein [Corynebacterium efficiens YS-314]
                           188
                           50.00
                           62.23
                           6
                           453.0
     

     
     
172913
                           emb|CAE50560.1|
                           (BX248359) Putative protease [Corynebacterium diphtheriae]
                           187
                           45.98
                           58.28
                           9
                           375.0
     

     
     
172917
                           gb|AAM37777.1|
                           (AE011935) protease [Xanthomonas axonopodis pv. citri str. 306]
                           189
                           45.50
                           58.20
                           11
                           363.0
     

     






      

          
GC ORFID: 47032How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4171Glimmer Score: 

          
Start: 4099144Stop: 4099707

          
Length: 564


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4171 translation of PA4171Homolog Bit Score 370.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6827 (ORF: BLASTX 149.0), t_PA4171 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGAAGCTGCAAGGCAAGAACGTCCTGGTCATCACCGCCAACACCGGCATCGAGCGCGACGAGCTG 
CTCGAACCGCTGAAGACCCTGAAGCAACAGGGCGCCACGGTCACCCACGCGACCATCGAGGGCGGCGAAGCG 
CAGACCTGGGTGCACGACAGCGAGAAGGACCTGATCGTCAATTCCGACGCCAGGCTGCAAGGCCTGCGCGCC 
GAGGACTACGACTTGCTGCTGGTCCCCGGCGGCACGGTGAATGCCGACACCCTGCGCCAGGACAGCGAGGCC 
CGGCGCCTGGTCAGGGAATTCAGCGACGCAGGCAAGACGGTCGCCGCCATCTGCCACGGCCCCTGGCTGCTG 
ATCGACGCCGGTGTCGCCCGCGGCAAGACCCTGACCTCCTATTCCAGCGTGCGTATCGACCTGACCAACGCC 
GGCGCGGACTGGGTCGACACGCGGGTGAAAGTCTGCCCGGCGAACGGCTGGACTCTGATCACCTCGCGCAAC 
CCGGGTGACCTGCAGGCGTTCAACGAAGCCATCGGCGAAGCCCTGCAGGCGGCCGCCTGA