ViewGene
Locus Name:
GeneID:
Location:

GeneID:4028
TrivialName: PA14_58380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58380
PAO1 Ortholog Locus:PA4499
Sequence Length:564
Protein Length:187
Start: 5199828
Stop: 5200391
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07887.1|AE004863_7 (AE004863) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 187/187 (100%), Positives = 187/187 (100%)
Sequence:
ATGACCGTAGACCGCATCGGCGAACGCCTGCGCCGCTATCGCCGCGCCGCCAAGAAGACCCTGCACCAAGTC
GCCAGCGAATCCGGTCTCACCGCGAGCTTCCTCTCCCAGGCGGAGCGCAACCTCACCGGTGTATCGATCTCT
TCCCTGGCCAACATCGCCAAGTCGCTGAATATCCCGCTCAATGCCCTGTTCGACCAACCGGCACAACCCCAG
CCCGACTCCCACGAAGGCGAGCGGGTACGCTACACCATCGAGGGCCAGCCGCTGGCCTACGAACGCCTTTCC
AGCTCCTTCCCCGGCAACCTGATCAATGCGGTCAAGATGAACATGCCGGTGGGCTACCAGTCGGAGCTGATC
TCCCATGAGGGCGCAGAGTTCTCCTACGTCCTGTCCGGGCAGATCGTCTACACCATCGAGGGGCGCCAGTAC
CCCCTCGGCGCCGGCGACTCGGTGCACTTCGACGCGACCAAGACCCATTGCCTGGCCAACGTCGGCAGCGAT
GTGGCGGAAGTCCTGACCATCACCACCATGGGCCTGTTCGACGACCATCCGACGCCCTGA
Translation:
MTVDRIGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPLNALFDQPAQPQ
PDSHEGERVRYTIEGQPLAYERLSSSFPGNLINAVKMNMPVGYQSELISHEGAEFSYVLSGQIVYTIEGRQY
PLGAGDSVHFDATKTHCLANVGSDVAEVLTITTMGLFDDHPTP*
AnnotationID:4035GeneID:4028
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4499
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00093
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD74472.1| (BX294143) probable transcription regulator [Pirellula sp.]
          Length = 233

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 3/182 (1%)






 
Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins.
CD-Length = 58 residues, 100.0% aligned
Score = 50.9 bits (122), Expect = 2e-07







   
Genomic Context:






   
Comment:


















    ReferenceID:8058




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25201




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31542




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4028_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4028
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6268
                           PA4499_tr
                           translation of PA4499
                           187
                           99.99
                           99.99
                           0
                           953.0
     

     
     
172904
                           gb|AAG07887.1|AE004863_7
                           (AE004863) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           187
                           99.99
                           99.99
                           0
                           953.0
     

     






      

          
GC ORFID: 47030How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4499Glimmer Score: 

          
Start: 4463506Stop: 4464069

          
Length: 564


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4499 translation of PA4499Homolog Bit Score 371.0

          
Other Homologs:  t_PA4499 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTAGACCGCATCGGCGAACGCCTGCGCCGCTATCGCCGCGCCGCCAAGAAGACCCTGCACCAAGTC 
GCCAGCGAATCCGGTCTCACCGCGAGCTTCCTCTCCCAGGCGGAGCGCAACCTCACCGGTGTATCGATCTCT 
TCCCTGGCCAACATCGCCAAGTCGCTGAATATCCCGCTCAATGCCCTGTTCGACCAACCGGCACAACCCCAG 
CCCGACTCCCACGAAGGCGAGCGGGTACGCTACACCATCGAGGGCCAGCCGCTGGCCTACGAACGCCTTTCC 
AGCTCCTTCCCCGGCAACCTGATCAATGCGGTCAAGATGAACATGCCGGTGGGCTACCAGTCGGAGCTGATC 
TCCCATGAGGGCGCAGAGTTCTCCTACGTCCTGTCCGGGCAGATCGTCTACACCATCGAGGGGCGCCAGTAC 
CCCCTCGGCGCCGGCGACTCGGTGCACTTCGACGCGACCAAGACCCATTGCCTGGCCAACGTCGGCAGCGAT 
GTGGCGGAAGTCCTGACCATCACCACCATGGGCCTGTTCGACGACCATCCGACGCCCTGA