ViewGene

Locus Name:
GeneID:
Location:

GeneID:4027
TrivialName: PA14_28320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28320
PAO1 Ortholog Locus:PA2766
Sequence Length:582
Protein Length:193
Start: 2447809
Stop: 2448390
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06154.1|AE004704_8 (AE004704) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 193/193 (100%), Positives = 193/193 (100%)
Sequence:
ATGCGCTACAAACCGGAACAGAAACAGGCCACCCGCGCCCTGTTGTTGAGCAAGGCCGCTCCGCTGGTGAAG
CGCCAGGGCTTCGCCAGCACCGGCCTGGACACCTTGATGAAGGCGGCTGGTCTTACTACCGGGGCGTTCTAC
TCGCAATTCTCCAGCAAGGCGGAGTTGCTCGAAGCGATCCTGCAGCGCGAGCTGAGCGCCCAGCACGATGCC
TTTCCGCTGGACAGCCTGGAGCAACTGGCCGGCGCCACCCGTCTCTACCTCAGTCGCGGTCATGCGCAGCAT
GCCGACATGGGCTGCCCGATTCCGGCGCTGGCCGCCGAGGTGGGCCGGGCAGGGCCCGAGGTGCGGGAAACC
TTCGAACGCGCCCTGGAACAACGGCAACGGCGGCTGGCCGAACTGATGGGCGACGAGAACCGGGCCTGGGTG
CTCACCTGCCTGTCGGTCGGCGCGGTGCTTCTCGCGCGTGCCCAGGCGAGCGAGGTGGCGCGCGACAAGGTC
CTGGATGCGGCGCTGGAGCATGCGCTGGGCCTGCTTTCGGCGAGCGGAGCGGTTTCGCCGCAAGCGGACCGG
GACTGA
Translation:
MRYKPEQKQATRALLLSKAAPLVKRQGFASTGLDTLMKAAGLTTGAFYSQFSSKAELLEAILQRELSAQHDA
FPLDSLEQLAGATRLYLSRGHAQHADMGCPIPALAAEVGRAGPEVRETFERALEQRQRRLAELMGDENRAWV
LTCLSVGAVLLARAQASEVARDKVLDAALEHALGLLSASGAVSPQADRD*
AnnotationID:4034GeneID:4027
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:28
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA2766
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:8056
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:25199
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36276
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4027_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4027

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6267 PA2766_tr translation of PA2766 193 99.99 99.99 0 952.0
172902 gb|AAG06154.1|AE004704_8 (AE004704) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 193 99.99 99.99 0 952.0
172903 gb|AAN68488.1|AE016481_4 (AE016784) transcriptional regulator, TetR family [Pseudomonas putida KT2440] 203 40.88 53.69 26 323.0
GC ORFID: 47029How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2766Glimmer Score:
Start: 2506117Stop: 2505536
Length: 582
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2766 translation of PA2766Homolog Bit Score 371.0
Other Homologs: t_PA2766 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCTACAAACCGGAACAGAAACAGGCCACCCGCGCCCTGTTGTTGAGCAAGGCCGCTCCGCTGGTGAAG
CGCCAGGGCTTCGCCAGCACCGGCCTGGACACCTTGATGAAGGCGGCTGGTCTTACTACCGGGGCGTTCTAC
TCGCAATTCTCCAGCAAGGCGGAGTTGCTCGAAGCGATCCTGCAGCGCGAGCTGAGCGCCCAGCACGATGCC
TTTCCGCTGGACAGCCTGGAGCAACTGGCCGGCGCCACCCGTCTCTACCTCAGTCGCGGTCATGCGCAGCAT
GCCGACATGGGCTGCCCGATTCCGGCGCTGGCCGCCGAGGTGGGCCGGGCAGGGCCCGAGGTGCGGGAAACC
TTCGAACGCGCCCTGGAACAACGGCAACGGCGGCTGGCCGAACTGATGGGCGACGAGAACCGGGCCTGGGTG
CTCACCTGCCTGTCGGTCGGCGCGGTGCTTCTCGCGCGTGCCCAGGCGAGCGAGGTGGCGCGCGACAAGGTC
CTGGATGCGGCGCTGGAGCATGCGCTGGGCCTGCTTTCGGCGAGCGGAGCGGTTTCGCCGCAAGCGGACCGG
GACTGA