ViewGene
Locus Name:
GeneID:
Location:

GeneID:4026
TrivialName: PA14_42730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42730
PAO1 Ortholog Locus:PA1684
Sequence Length:546
Protein Length:181
Start: 3801038
Stop: 3800493
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05073.1|AE004595_12 (AE004595) probable oxidase [Pseudomonas aeruginosa PAO1]
Identities = 181/181 (100%), Positives = 181/181 (100%)
Sequence:
ATGAGCAGCCTTACCGTCTATCACGAGAACCAGCCGGAGCAGCCGCTGAAGCTGCTGACCCATGCCGAGGAC
ATCGCTTCGACCCTGGCCGAGGTCGGCGTCCGTTTCGAACGCTGGGAAGCCGCCGCGCCGATCGCCGCCGGC
GCCAGCCAGGACGAGGTGATCGCCGCCTACGCCCACGAGATCGAGCGGCTCAAGCGCGAGCGCGGCTACATC
ACCGTGGACGTGGTCAGCCTGAACAGCGACCACCCGCAGAAGGCCGAATTGCGCGCCAAGTTCCTCGACGAG
CACCGCCATGGCGAAGACGAGGTGCGCTTCTTCGTCGCCGGGCGCGGCCTGTTCGTCCTGCATATCGAGGAG
CATGTCTACGCCGTGCTCTGCGAGCGCAACGACCTGATCTCGGTGCCGGCCGGCACCCGCCACTGGTTCGAC
ATGGGCGAGCACCCGCATTTCGTCGCCGTGCGCCTGTTCAACAACCCGGAGGGCTGGGTCGCCCAGTTCACC
GGCGACGACATCGCCAGCCGCTTCCCCCTGCTGGAAGACTGA
Translation:
MSSLTVYHENQPEQPLKLLTHAEDIASTLAEVGVRFERWEAAAPIAAGASQDEVIAAYAHEIERLKRERGYI
TVDVVSLNSDHPQKAELRAKFLDEHRHGEDEVRFFVAGRGLFVLHIEEHVYAVLCERNDLISVPAGTRHWFD
MGEHPHFVAVRLFNNPEGWVAQFTGDDIASRFPLLED*
AnnotationID:4033GeneID:4026
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:55
Gene Name:
Confidence Code:3
GeneProduct:putative oxidase
Cell Localization:()
Synonyms:PA1684
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03079
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55564.1| (AE016863) ARD/ARD' family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 181

 Score =  296 bits (759), Expect = 3e-80
 Identities = 139/181 (76%), Positives = 159/181 (87%)

>gb|AAD11793.1| (AF102514) E-2/E-2' protein [Klebsiella oxytoca]
          Length = 179

 Score =  219 bits (558), Expect = 6e-57
 Identities = 104/178 (58%), Positives = 131/178 (73%)

>gb|AAM41108.1| (AE012284) dioxygenase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 188

 Score =  207 bits (526), Expect = 3e-53
 Identities = 95/177 (53%), Positives = 126/177 (71%)






 
Structural Features:
pfam03079, ARD, ARD/ARD' family. 
CD-Length = 157 residues,  98.1% aligned
Score =  119 bits (299), Expect = 2e-28
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:8054




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:25197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37255




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4026_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4026
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6266
                           PA1684_tr
                           translation of PA1684
                           181
                           99.99
                           99.99
                           0
                           952.0
     

     
     
172889
                           gb|AAG05073.1|AE004595_12
                           (AE004595) probable oxidase [Pseudomonas aeruginosa PAO1]
                           181
                           99.99
                           99.99
                           0
                           952.0
     

     
     
172890
                           gb|AAO55564.1|
                           (AE016863) ARD/ARD' family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           181
                           76.79
                           87.84
                           0
                           759.0
     

     
     
172891
                           gb|AAD11793.1|
                           (AF102514) E-2/E-2' protein [Klebsiella oxytoca]
                           181
                           57.45
                           72.37
                           2
                           557.0
     

     
     
172897
                           emb|CAE07167.1|
                           (BX569690) similar to methionine salvage pathway enzyme E-2/E-2' [Synechococcus sp. WH 8102]
                           188
                           52.12
                           64.36
                           9
                           489.0
     

     






      

          
GC ORFID: 47028How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1684Glimmer Score: 

          
Start: 1152871Stop: 1153416

          
Length: 546


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1684 translation of PA1684Homolog Bit Score 371.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene858 (ORF: BLASTX 304.0), t_PA1684 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGCCTTACCGTCTATCACGAGAACCAGCCGGAGCAGCCGCTGAAGCTGCTGACCCATGCCGAGGAC 
ATCGCTTCGACCCTGGCCGAGGTCGGCGTCCGTTTCGAACGCTGGGAAGCCGCCGCGCCGATCGCCGCCGGC 
GCCAGCCAGGACGAGGTGATCGCCGCCTACGCCCACGAGATCGAGCGGCTCAAGCGCGAGCGCGGCTACATC 
ACCGTGGACGTGGTCAGCCTGAACAGCGACCACCCGCAGAAGGCCGAATTGCGCGCCAAGTTCCTCGACGAG 
CACCGCCATGGCGAAGACGAGGTGCGCTTCTTCGTCGCCGGGCGCGGCCTGTTCGTCCTGCATATCGAGGAG 
CATGTCTACGCCGTGCTCTGCGAGCGCAACGACCTGATCTCGGTGCCGGCCGGCACCCGCCACTGGTTCGAC 
ATGGGCGAGCACCCGCATTTCGTCGCCGTGCGCCTGTTCAACAACCCGGAGGGCTGGGTCGCCCAGTTCACC 
GGCGACGACATCGCCAGCCGCTTCCCCCTGCTGGAAGACTGA